Array 1 21120-22916 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJL01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2026 NODE_2_length_149418_cov_5.52398, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21120 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 21181 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 21242 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 21303 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 21364 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 21425 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 21486 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 21547 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 21608 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 21669 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 21730 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 21791 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 21852 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 21913 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 21974 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 22035 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 22096 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 22157 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 22218 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 22279 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 22340 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 22401 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 22462 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 22523 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 22584 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 22645 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 22706 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 22767 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 22828 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 22889 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39598-41337 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJL01000002.1 Salmonella enterica subsp. enterica serovar Hadar strain BCW_2026 NODE_2_length_149418_cov_5.52398, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39598 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 39659 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 39720 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 39781 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 39842 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 39903 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 39964 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 40025 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 40086 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 40147 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 40208 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 40269 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 40330 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 40391 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 40452 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 40513 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 40574 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 40635 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 40697 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 40759 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 40820 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 40881 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 40942 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 41003 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 41064 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 41125 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 41186 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 41247 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 41308 29 100.0 0 ............................. | A [41335] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //