Array 1 23196-22896 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZK01000030.1 Neisseria meningitidis strain NM2206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23195 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23129 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 23063 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 22997 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 22931 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TAAAGTCATCGGCGAGATTAAATGGATTGAGTTCACTTCTATGAAACAAGCCTAATGCAGGTAACCAACCGTATAAGGTCAGGGCGCGTGCAACTGCGGCACGGAGTACGGCGTAGGTGTAGTTCAATGCGGCATTGACGGCGTTGTTGTCATTACGGGTAAATTTTTCGCCAAAGAGGGCTTGAAAGTAGAGGGCGGCAGCTTGGGCTTCACGGTTTCCTGTATCGCCTGAACGGACTTCAGATGCCAAAGTGCGCAGCCGTTTGGCTGCAAGATCATTGCCTGTTTCGTCTGCGACAAATGCTTGGTTCAGGATTTTTTGGCGGACGATATGTTGCCAGAGTTGCTTTTTTAAGGGTTCGCTTATGTTCAGTTGCAGTTTGAGGATTTTAAGTTGGCGGTGATATTGGGCATAAGGCAGCCATTGTCCGCAGGGCAGGAACTGCTCGTCGCAGGTCAGCAGGGTTGCACCATGCTCGGCTAAGGCTGATAGGAGCGGN # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 25234-24341 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZK01000030.1 Neisseria meningitidis strain NM2206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25233 36 94.4 30 ........G...A....................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 25167 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 25101 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 25035 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 24969 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 24903 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 24837 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 24772 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 24706 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 24640 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 24574 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 24508 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 24442 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 24376 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //