Array 1 551-918 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ253972.1 Porphyromonas gingivalis SJD12 scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================ ================== 551 38 100.0 28 ...................................... AAATAATCACACTTATATAATATGGCAG 617 38 100.0 28 ...................................... AAATAATCACACTTATATAATATGGCAG 683 38 100.0 28 ...................................... AAATAATCACACTTATATAATATGGCAG 749 38 100.0 28 ...................................... TCATTGAACAGCTTTACGAGCAAGGTGG 815 38 97.4 28 A..................................... CAAATGGAGGAATTATAGAAAAATGTTC 881 38 97.4 0 .....................................C | ========== ====== ====== ====== ====================================== ============================ ================== 6 38 99.1 28 TGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACA # Left flank : ATCGTTTTCATTTTGTATATAAATCGTTTTTGATTTATATATAAATCGATTGCGATAAATATATAGAATGCAAGCCGATTTGATATAAATCGGACACCTCGAAAGACCTTTAAGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGCTTGTATCAGCGATACGCAATGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCGCCTGCAAATGTAGCGAAAAAGCCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCA # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCATTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTTGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCAATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAAGAATCCGCTGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 21642-22335 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ253983.1 Porphyromonas gingivalis SJD12 scaffold15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 21642 37 100.0 35 ..................................... CTTCAAAACTAACCGAAGGGGAGTTATGGAAAAAT 21714 37 100.0 35 ..................................... CTTCAAAACTAACCGAAGGGGAGTTATGGAAAAAT 21786 37 100.0 35 ..................................... CTTCAAAACTAACCGAAGGGGAGTTATGGAAAAAT 21858 37 100.0 37 ..................................... ACAAGAAGCACGATCGCTGCTAGCAAACTGGGATACA 21932 37 100.0 35 ..................................... TTAAAGAGGTATCATTTGTTCATTCGCACGATACG 22004 37 100.0 36 ..................................... AGCGCGAGATGAAGAAATAGAAGCATTCTTCAATGA 22077 37 100.0 37 ..................................... TGTATCTAATGCAACTCTTGTTTGGATGGGGAATCAA 22151 37 100.0 37 ..................................... TGTATCTAATGCAACTCTTGTTTGGATGGGGAATCAA 22225 37 100.0 37 ..................................... TGTATCTAATGCAACTCTTGTTTGGATGGGGAATCAA 22299 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 100.0 36 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : GAGCCTGTCCCCCCGAAAACGACCGAACTTTCCTTTGCGGACAAATCCGCCTCTCCGAAGTTCACAGACCGGAAATGCTCGGATTGCGGAGCGTGTTTTCGGGAAAAGCGGCGCGAGAATTTTTTCGCTGTGGTGCGAGAATTTTTCACTTCCCGAACCAAAACGAAAAAGTTCCCGCGCCACGTTTTTCAGAGCATCGATAGTCTTCTCCAAAGAGTCCGTTATCCACTTTTATAAGACCGCTACACAACTCGCCTGTGCGTTTGGCATCCTCGTAGATGTGTGAATACGAAGGATGTTTTGAGTTGTTTGCTGTTGTTTTTCTATCGGTTGGACTCTCCCTTTACTCCCCATTCGGAGGCTTAAACCTCCGAATGGGGAGATTTTTCGTCTATTTCATGCCATAGAGCACAAGAAGCCCGGGCATGCGCTTAAGATTGTAGGCCATCGCTTCCAGAACACTCTGTGTATGCGTTCGTTCTAACCCCTCGGTAATCAGT # Right flank : GTACTTGAGCGACTGCAAGTTACGAATAATCCCAAACGTAACGCATTGACAGAGAACGATTCTATTTTTTTCGAAAATACAAGTTGAGAAATGCAGCTACAACACTATTTTTGCAGTTGAGTTGATTATATCTCATTGATATACAATGAGATTTCCTGATTTTCCGTTTTCGAAAATAAGAAAGAGGGAGCCTTCGTTTTTTAGATTTTCGAAAAATAGAGAAAGACACCGTTTGATAATCAAACACTTACAAATAGCGAAAAGCCTCTATTTTTCGAAAATAAAAGTCCCAATTCTCCTTTTCTCCTATTTTCGAAAAACAGGAGAAAAGAGTTGTTCTTGCAACCGACTGATAATCAATACGTCAAAGAGCGATGTGAGGTTCGATTTTTTTCGAAAAACTAAACCACTATACTTTTCCTTTTTCTCCGGCTCTTAGGGAGGGTCGGATGTCCGCTCATCCAAGCAGCGGTGTAACAATGCTGACAGAGAGGAAGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 5774-6340 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ254060.1 Porphyromonas gingivalis SJD12 scaffold92, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ===================================== ================== 5774 39 100.0 36 ....................................... ACCATCTTTCACGTCGTACGTGTCGCTGAGCTGTGC 5849 39 100.0 37 ....................................... CTTTTTCGCTGACAGTAAACGGAATAACGCGCTGTGC 5925 39 100.0 37 ....................................... TTAAGCTGCGACTGAAAGGAAGCGAGTATCGCTGTGC 6001 39 100.0 37 ....................................... AACTCGATGATTGACGCTATGAACTACATGGCTGTGC 6077 39 100.0 36 ....................................... CGCTCTGCGCTGCCGTCCTCACGGAGAATGCTGTGC 6152 39 100.0 36 ....................................... CGCTCTGCGCTGCCGTCCTCACGGAGAATGCTGTGC 6227 39 100.0 36 ....................................... CGCTCTGCGCTGCCGTCCTCACGGAGAATGCTGTGC 6302 39 100.0 0 ....................................... | ========== ====== ====== ====== ======================================= ===================================== ================== 8 39 100.0 37 GTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATTACAGATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGAAACTGCAGCCGACAGGAAACGTGCAGCAATCTTTCGGAAAAATCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATCTATATCAGACACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGGGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCAGCCATGGAGATCATTTGTGGGAAAGGAAGAGAGTATTATCAGCCACCCCTTCAGCTTGAACTTTTTTAAATATATTCTATCATCTTTTGTGGAATTAGCGCTTTTCGTCTGGGGCATAGAAATTAAAAAGCCGAGAGAAATCTCGGCTTTTCAGTTACGCACAGTTGTTTTTTTCTTACTCACAACCACCCTCTATGTCCTGTATTACAGGTGATTACTGGGGTTGTGCTGTGC # Right flank : TATACTACTGGGTACGCTTCCTTGAGAGCCTGATCAAGTTCAGCGAATCGAACGGCATATTCGCCGGCAACTCGATCGACGACTTGCAGGGGATACTCGAAGAAGATACCTCTACCTATATAAAATACAGAATCCTAAAATTCAAAAACGAACAAGATGAAGAAGAATAAATACACCCTGTAAGACGGGGGCAGCCGGCTGTCCGACCCGAGGGACAATCAAACCTTTATGCGCGAGTTTGCCGATCGCTACCGGTCTTTGTTTGCCCATGATATAGATACCTCTTCCGAGGAATCGTTCCTGTCCGATCTTATGAAGTATGAATATGTCCGCACCAACTAAAAAAATCTCCGAAAAAAGTTGCGCATATAACAAATACGTTATATATTTGTAATTAAATGACAGGTATATGAAATGGAATGAACTCAGGCGGATAGCCGAAAAGAAAGGGTGGGTGCTCCACCGCTCAGGTGCCAATCACGATATATATCGTCACCCTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 95-1372 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ254049.1 Porphyromonas gingivalis SJD12 scaffold81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 95 30 96.7 34 A............................. TAGTGATTGCTGTGCTGGGTGCTTTCCTCTTGCT 159 30 100.0 36 .............................. CCGCAAAATTGAACCCAAAAAACACCCCCTCCAAAT 225 30 100.0 36 .............................. TCTTCGTCGCTGTCAGCGAGCAGGCTAAAGCTCGCA 291 30 100.0 34 .............................. CCCCAGATGACGCGATTGTACAGGGCTGCCTTAT 355 30 100.0 36 .............................. CGTATGCTCAGCTCAAGCGCGAGGCCGCTCGGCTCA 421 30 100.0 35 .............................. ACGGACATGCGCGCCTCTGTGGTCATGGGCGTGTA 486 30 100.0 35 .............................. TTCGTGTTGTTTCAATGCTCTCGTGCCCCATCAGA 551 30 100.0 36 .............................. CATGCGCGAAGATGGGTTTATCGAGAGAGGAGAGGG 617 30 100.0 36 .............................. AAGTATTGGGGAGAAGGTATTTGGGTCGTTCTCCCA 683 30 100.0 37 .............................. ACACTACTGTACAGCGCATCGTAATCGAACACCACGC 750 30 100.0 35 .............................. CGCTTCAAAATCAAAACTACTTTTCAATTTCGTTC 815 30 100.0 36 .............................. ATCTTCAGAAAGTTGAGCACGTGTTATAACAAATTC 881 30 100.0 37 .............................. TATCAGATACACTCTTGAAATATTGGTCATTTGATTC 948 30 100.0 37 .............................. CTTTCTGGATATTAGAACAAAAACGTTTAACTGGTTT 1015 30 100.0 34 .............................. ATCAACGCCCTGCAAACGGCCCTCAACAAGGCCA 1079 30 100.0 36 .............................. CCGACGGGGGAGTCGTGTACGGCACTACGTACGCGA 1145 30 100.0 36 .............................. AGTGACAGTAAAAACGGGAGAAATATACTTCAGCTT 1211 30 100.0 36 .............................. AGTGACAGTAAAAACGGGAGAAATATACTTCAGCTT 1277 30 100.0 36 .............................. AGTGACAGTAAAAACGGGAGAAATATACTTCAGCTT 1343 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.8 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : ACACTAATTGCCGTGCAAAGGTCTCAATACCTAAAATACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATACA # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGAGGTATGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGACTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTATACTAAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //