Array 1 143865-144010 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP043610.1 Bacteroides fragilis strain GUT04 chromosome, complete genome		Array_Orientation: Unconfirmed

  Position	Repeat	   %id	Spacer	Repeat_Sequence         	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	========================	=====================================	==================
    143865	    24	 100.0	    37	........................	AACAAAAATACTAAGTATTTGTTTGATAAGCAAGGAA	
    143926	    24	 100.0	    37	........................	GCTTTTTGTGGCTTGAGTTATGTACCTTCATCATGAA	
    143987	    24	 100.0	     0	........................	|                                    	
==========	======	======	======	========================	=====================================	==================
         3	    24	 100.0	    38	ATTCCCAATATATTGTGAATTTGA	                                     	       

# Left flank :   CGTGTCGGTATGTGCTGTAGCTAATAAAATACCAAAATCATCTTTTTCATCAATCTGCAATAATCTTGCCTGAACGATGCGGTTGTGCCCTTCTGACAGCATGTTGGCAAAAAAAGGAAATAGATAATGGGAAGTATATTCCTGTTGTTGTTTTGTCAATGTCAGGCTTATGGAGGGCTTTGATGGATCATTGAAATATTCGTCATCATAGCGAAATTTATATTCGTTAGAAGATAATTCCGTAATAATGCCTACCCGTTCTTTATTCAAGTATACGACTCCTTGTCTCATAGATGTCCCTCCTTATTTTTAATTTTCAGAGAAAGTTCTAATCCTAATACCTCCAATATGGCATAGAGCTTTTGAAAATTAATATTTATTTCTCCATTTTCAATTTTTGTTATAGTATTGATACTGATTTGTGCTAAATCGGCAAGTGTTTGCTGATTTATACCCAACATTTTTCTTCGTTGGCGAATCTGTATTCCAATTTGTTTCAT
# Right flank :  ATTACGGCTATTTGTACTTTTGATTTTAGAATGACAGAGATTTCTTTTTGTTTGTAGAGTGTTTCTCAATTAACATTGTTAACGCCATTTCTCCGTTATTTTATTCTTGTGTGCAAATAACAAGCCTTTTGCATTGAAAACACTTGCTATTTGCATTTAAAGAACAAGCTTTAACGTAGCGTTAAAACAAAGCTTTGGGCGAGAGAAATCTTGTGCTTTAAAAACACTGTGTTTTAGTTCGTTAAGCACACTTTTTACTTCTTTGTTTCGCTGAATCCCTTTCTGGTCAAAAGCCTGTATATTTGCTTTTTTGTCAACTACAAATAGGGGACTGACACTCTCTGCTACCTTCTTTTCGTCTTGTTTAGCGCCGCTATCAGGTATCTTCCTTTGGCTCCGATGTCGCTCCAGCAAGTGTTGGCAATCAGTTTCCATACCGTCGTTCCCTTCCTCCCATAGTCCGACAGCCTGAGTATGGAGTTTACTTCCCCGGTGTCGGT

# Questionable array : NO	 Score: 2.67
# 	Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATTCCCAATATATTGTGAATTTGA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:75.00%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         NA [0,0   Confidence: NA] 

# Array family : NA
//


Array 2 3903007-3904052 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP043610.1 Bacteroides fragilis strain GUT04 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                                	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	===============================================	==============================	==================
   3903007	    47	  95.7	    30	...A......A....................................	GATTCGAAGATATGCAAATGTAGCAAGTAT	
   3903084	    47	 100.0	    30	...............................................	CGTAACCGTTAGCTTGGCGTTATGCTTGGC	
   3903161	    47	 100.0	    30	...............................................	GATGAACAATCTTTCACAAGCCTACTTAGA	
   3903238	    47	 100.0	    30	...............................................	TTTGGGATTCAGAACTTGCCCATTCATTCT	
   3903315	    47	 100.0	    30	...............................................	TATGGAGGCAAATTCTCCGATTATCCGGGA	
   3903392	    47	 100.0	    30	...............................................	AGGAGCAACCCAAGACTTTAAAGTATCAGT	
   3903469	    47	 100.0	    30	...............................................	AATCCACGGAAGATTGCGGTTAAAACTGAT	
   3903546	    47	 100.0	    30	...............................................	CAAGGCAGACAATAGGATTTTTGCGTTCGT	
   3903623	    47	 100.0	    30	...............................................	ACGAAGTTGAAGAACATCAAACTTAGAAGA	
   3903700	    47	 100.0	    29	...............................................	TTTAAGCTCCGATTTAACAGAGCGGTTGT 	
   3903776	    47	 100.0	    30	...............................................	TCAGTAGAATAGGTAAGCGTAACAAATTCA	
   3903853	    47	 100.0	    30	...............................................	TGATGGTTCTATTGATATTTCCGCTGTTGA	
   3903930	    47	 100.0	    29	...............................................	GCAACCTGAAAAGAAGGTAATTGACCAGC 	
   3904006	    47	 100.0	     0	...............................................	|                             	
==========	======	======	======	===============================================	==============================	==================
        14	    47	  99.7	    30	GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC	                              	       

# Left flank :   TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC
# Right flank :  CTTACCCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:65.96%AT]
# 	Reference repeat match prediction:         F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-2.20,-3.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.78   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//