Array 1 59-359 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSKI010000145.1 Raoultella sp. 18111 isolate 18111_WYM25_C4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 59 32 100.0 34 ................................ GACATCGCCACCAAGACGCGAAGGATCTGAGAAT 125 32 100.0 36 ................................ ACGTGGGCAAACGCTGAACACCTAGCAAACGTGCTG 193 32 100.0 35 ................................ TCTGACGGCAGGCGAAATCGATGAGATGTGCGCAC 260 32 100.0 36 ................................ TGACCCATGGCCGACACCAACACGGGGACGGCAACC 328 32 96.9 0 ............................C... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 99.4 36 GTCGCGCTCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : CCGCGTGGGCGCGTGGGTTGAAACATGCCCCACGGCCTCCATAATCGAGTAGGCCTCGG # Right flank : CACGGGAGCGACGAATGAGCCTTTTTCAAT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 209586-210102 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSKI010000004.1 Raoultella sp. 18111 isolate 18111_WYM25_C4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 209586 29 100.0 32 ............................. GCCCCGTTGACCTGCTTATCGTCCTTTTTCGC 209647 29 100.0 32 ............................. ATTGTTTTTCTTAAAATGTTTACGTTGGATCA 209708 29 100.0 32 ............................. CGCGATGTTGAATTTGCGTCAGGATGAAAGCC 209769 29 96.6 32 ............................A GCTCCATAAAAATCGCGCCGAGGAAATCATGA 209830 29 100.0 32 ............................. TGATGATTCAGGATGCGTTTATTCGATTACGA 209891 29 100.0 32 ............................. ACACTCACACCGGTTCAGATCGCTGACGCAGA 209952 29 100.0 32 ............................. GCGACTGTTAACCAGCGGCTGGATACATTAAC 210013 29 89.7 32 .T........T................A. ATGATCTGGATAAACTCCGCGAAGAGTATGAA 210074 29 79.3 0 TG.......A.C.......AT........ | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.2 32 GCGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAAGCAGGCGTGGTCGGAATAAACGAAGCCGGTTCCTCGCAGCTCTTTTCCCAGCCAACCTTGCCCGGCCTGTTCCTGCCATTCTGGCGCTAAAATATGCAGTATCGGTGGCTGACGTTCATCGGGCAGTATCGCTTTGCGTTCCCCACCGGCAGTGCGGATATGGCGCTGAAGTCGACCGGCGCGCTGGATCAACAAATCTATTGGCGCCAGATCCGAGATCATCCAGTCAAAATCCAGATCGAGGCTTTGTTCGACAACCTGAGTGGCGATTAACACTTTCCCCCGCCGCGCTGAAACGGGGGCATCTTTACCGAACCAGCCGAGGGTTTTATTCTCAATGGCAATACGATCGGCAAAGGCGAAGCGGCTGTGGAAAAGTAGCAGATCCTGTTCAGGGATGCGCTTTTCATGCAACAGCTGCTGATAATCTTCGCGTGCTTCATCAACCGTATTACGGATCCAACATACGCATTGCCCGGCTTCGACTGCACGATAAA # Right flank : GCATTGTGCATTACTGCCAGATAACGTAGGAACGTACTCTTCCACGGCTGCAGCAAAACGCCGGCTAGCCGTGCTTATTGGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACCTTGACGACGTCGCGGCTGCGGCGCTCGATGCGGCCGGGCAGCGCTTTGTCGATATGCTGCTGATTATCCAGCTGCACGCTGTGCCAGCTGGAGCCGTCAGGGAAGGCAGATGATTTTGCCCGCTGCTGGAAACCATCTTTCTTACCGAGCGACCAGTTGGTGGCCTCCACCGACAGCACCGGGATCCCGGCGCTATCAAAAACGCTGGCGTCGTTACAGCAGTCGGTGCCCTGCGGATAGTCGCGGTTCAGCCCCGGGTTGCTGAAGGCGGCAACGCCTTTGCTACGGGCGATGGCCAGCGCCCGGTCGCGGGTCAGCTTGCGAATCGCCGCCGGTGTGCTGCGGCCGCTATTAAAATAGAGCTTGTCGCCGACCACCAGGTTA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //