Array 1 74034-74264 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVX010000014.1 Thermoactinomyces sp. CICC 10523 NODE_14_length_81423_cov_2.762997, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 74034 30 100.0 36 .............................. ATTTTCTCCATGTCCTGACGCATTTCTCGTGGTATG 74100 30 100.0 36 .............................. TAAACTCCAACTTGAAGGTAATCATCAACAGCAAGA 74166 30 100.0 38 .............................. GGATGGAGCCGATCTCATGAAATCCCTTTTCCGTGTAT 74234 30 80.0 0 ...................CC.GG...T.T | A [74250] ========== ====== ====== ====== ============================== ====================================== ================== 4 30 95.0 37 GTTTAGTTGTATCCATATTGGAATTGAAAC # Left flank : CCGTGGCTACATTGATGACCTCAAGAAGACCGAGAACAATCCGACATCGAATATGGGGATTTAGGGTCACTTCATGATCCGATTTGATCACCAGTTGTGTACCATCCCATCCGGAGACCACTCAAAATCATAAACGCTCCGATATGGGATGTTCTTCACATGATCGATCACATTATGAATCATATGAAATATGATTTGATCGATGATATCAAGGATGAAAGTTAAATCTCTGATTTTCTTTGTCTCGTCTGTGTTGCTACCATTTCTGACAAATCCAAAGTGACTCGCATTTTCAAACCTTCCATCATGATTGGTACGGCTGTCCTGCCAAAATCAAGCGACAGGTTTTAATAGAGAAGTGATTGGGGAACATCAATAAAAATCCGAGCACATCCAAGAGTCTGTGAACCTCCCGGGGATTTTGCAGGATTGGAGGTTTACAGACTGATTTTGTTTTTTATAAACTGAAAATAATTGATATTATCGATATTCACACACGG # Right flank : TGTGGTGATTTAGTGCGGAGAAAAACGATTGAGCGAGTTTTTGCCGATATGAAAGAGATGCATGGAATGCGTTGGACGACGCTTCGTAGGAAGCGTCGTATTCAGATGTACAGTCTGACTCCTACCAGTAATATACAATGGTAGGAGTCATCAGCTCCTAACAATATTTATTCTGCTCGGCAAACAATTTTCCAAGCTCTCTTAATAACGCTGGTGAATCGAGTCGTCCCATATGAACTTCGATAAACACCAGTTTATTTGCTTTTTCAGCTTTAGAGAGCACTTCTTCCAGTTCTTCTTCAGTTTTAATTTGAAAGCTGATGCTGTTCCCATTTAGATCCAGCACATCCGGTATGCGTCTATAATTCCACCTGTTTATATCGTTATACCTCTGCTCGGCACCATGAATCATTCGTTCAACGGTGTAACCGTCATTATTGATCAAGAAAATAATCGGTTTCAGGTCATGAAGAAGGATCGTAGACAATTCTTGAGCAGTA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGTATCCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 270851-271036 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVX010000003.1 Thermoactinomyces sp. CICC 10523 NODE_3_length_306190_cov_3.292701, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 270851 37 100.0 38 ..................................... CCGTAAAATTCCCGACATAATACTGCTCTCTCCCAATG 270926 37 100.0 37 ..................................... CAGGAAATAACGATCAGCGGAACTGAATATCCCGGCG 271000 37 91.9 0 ...................GG......A......... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 97.3 38 GCATCAATGAATACACCTCTAGCAAGAGGATTGAAAC # Left flank : GTAAAAAACGCCCACCCTCAGGCGCAAAACCATGCGCAGCTGATCCTCCCTTCCAATAACGACAACGCGGTGGCGCATTTGATTCAAAATCATTTATTGCCAACACTTTCCCAAACATCAAACTGAATGGAAAAGGAGACCTGTTGCCGGGTCTCCTTTAGACTTGTATCCGGATTGTTCTCACTTGGATCTTCAAGCGGAACCGGTTATCTCAAAATAAAAAGTGAAAAATTCTGCCCTTTTCTGTTTTTTTGTTTTCTCATTTGCTATATTAGCAGTAAGGTGCTGCAAGAAGATCCCTGCCATCATTTGCGAACACCGGAAGCTTCGAAACAGATCGAAGGGATGTTCGGAAACGCCAAAGGTCGCAAAAACAAAGGGGAATCAGACTTTTTGAATGGAGAAGATCCTGTCAAAACGGTCCGAAACCCGGATGAATCAGAAAGGTGTTCGGAAAATCACGTACAAACTCAATAATCAGAAAGGATCTCATGAACGCC # Right flank : CATCTTGCGGAAACGGCCGTGATCGGGGCTCGTTGAATCAATTTACGTATGAGCAAACAATCCATATGCTCTGTCGATTTATTTTCACACCCCGGATGAAAACGAATTTAAGATGATCACAACTTTATGATCAGACTTCTAGGGGGGGATTTACCAGCCACGGCATTGGATGAATGGTTTATCAACAAGAATGAATTTTCTAGAATTTTCATCAATATTTCGTACACGTCACTACTGGTCTGCAAGAGGGGAATATTTCCGCCTGGTCGATCGGGCGAATTTCCCGGCGGAAAATTTAAGCGATCCTCTTTGGATTCCCATTCACAATTAAATTTTAAACACAAGCAAACTCGTATCAAAAATCGCTTCCATCTCATAAATTTCATATTGGCTTAATTGCAGCAATGAACACGGTTTCAGCCTGAACCGCTGATTATATACACTAAACATGATCTCCCCGCGAATCAAAAAAATAATTGCATCAGAGTTTAAATAATGAC # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCAATGAATACACCTCTAGCAAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 204153-204413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVX010000006.1 Thermoactinomyces sp. CICC 10523 NODE_6_length_212079_cov_2.790230, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 204153 37 100.0 40 ..................................... AATTGAACCCCAATTTCATTAAAATGAGATTAAACCTAAA 204230 37 100.0 36 ..................................... AAGTCAGGATTGTAGCTCTTGCGGACGACTTCCAGA 204303 37 100.0 37 ..................................... TTTCGGTGTCTAAAGTAACCACGTCCGAGCGCTCATT 204377 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 4 37 100.0 38 GAATCAACAAGTACACCTCCGGTAGGAGGATTGAAAC # Left flank : TCTTCATCATATTCTGTGTTCTGAACTGTAGCGGTCAAAATACCCAGTTTTAGTTGTGGGGCCGCATCTGACAAAGCAGGATCGATATGAATTGGTTTGACCATGTTATACCCTCCTTTAGTATAGACAGTGTGAATCTCTTGTATTTCTTCTAATACAGGTGCCGGTTGTCCTTCTGCTGTCATATATATCAATCCTGGAGTATACATGGGCGGTTCGTCTCACTAACTAGTTACCAGGCTGTATTGCAAACAACAAAATGGATTACTTATAATTGAAGATAAAATATGAAAAATTTTCGCCGGCATTTGCGAACACCGGAAGCTTCGAAAAAGACCCAGGGGGTGTTCGGAAACGCCAAAGCCCGCATAAGATAAGAGGGAACACTACTTTTTGGATGGAGGTTATCCAATCAATAAAGCCCGAAACTTGTCCAAATCTGGGAGATGTTCGGAAAATTGCATACAAACTCAATAAAATCAAAGGGTACAGTGAACGCT # Right flank : CGTGTCGAGAATCGGCTGACGTTGCTTCTGGTAACACCGAATCAATAAATAAACTTCAGGAGACCATCGTACTGCGTTAGTCACTAAAACAAAAAAGTCTGTCAACTTCCAGCACCGTAAAAACCCGGGGGTTGACAGACTTTTGTTCAGTTTGTTTCCGATACGAAGGGAAAATGGCTCCATATTTGAGAATTGTTGCCTGCCTTTGCCAAAAAAAAGAGGCGTCCATCGCCTCTCTAACCTAGGGCATATAAGTCGAAAAATCCAAAAACATTTCTGTTTATTGGAAAGAACCGAGTCGCCGGATGCTGGCTCTGCCTCTGTTGATTTAAGCATTAAATTCCTTCCACAATCCGTTTTGCCCGTTGATGCGCCTCGTACAACAGTCTCTCTTCGTCAATCGTCAACAGTTCTCTGTTTTTCATCAGGATCTTTCCATTCACAATCGTTGTCACCACATCTTGACCGAAAGCGGAATATACCAGCAGCGAGACCAAATC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCAACAAGTACACCTCCGGTAGGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 2 210488-210260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVX010000006.1 Thermoactinomyces sp. CICC 10523 NODE_6_length_212079_cov_2.790230, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 210487 30 100.0 36 .............................. CCCTTTAATGTCGATCATGTAAATATCACCCCATCT 210421 30 100.0 36 .............................. TTCGTAATTGCTGTACACGATGGCTGTCCTGAAAAC 210355 30 100.0 36 .............................. TCGGTCATTGACTTGGTATGTTGGGTTTGTGTAATC 210289 30 93.3 0 .................T...T........ | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 98.3 36 GTTTAGTTGCATCCATACTGGGATTGAAAC # Left flank : AAGAAAGCGTACCTTTCACTTTCATGACCGAATCCAAGTTCACTCTTGAAGCGAAGTTGCACCGGGAAAAAACAAACGGTTTGTATCTTCTTCCTTTGTATTTCAAACCAGTGTTATGCAACCATTCGGACAGTTCAGGTGCGGCTTGCTTAATGCAACGATAGATATAACTGCTTATGTAGTAGCTCAGATCATAAGGCAACAGGATTTCTTTCGCTAAATGAAATTTCACTTCAACACGCATTTGAAAGAACGTCACCCCTTTCTTCTGTCGTAGAAATTATAATGTTGTTCTTTAAGGAGATTAATTCAAAATAATATTTTCTAATAAATCTATCAACTGCCGTTTTTATTTATCTTTCTGTATTTTATTCTAAAATCCTATTTTCACTTGCTTTTTCTGTGAACCTCCCGGGGATTTTGCACGATTGGAGGTTCACAGACTCTTTCCACTTTAGTTATAATGAAAAATAATTGATATTACTGATGTTCACACACGG # Right flank : ACTACGATGATGATCAGACACGAAGAGATGAGCCACGTGTTGAATCGATATCAGGATTAAAAAGGCATCCGTACCTTATTATTCCAAATATATCAAAAGAATAAGACAGATATTCTTACGTGGCTGATTTCGCCCCGGCCAATCTAACAAACCAGGGTATTGCGCCCTGGACTCTTCATTCAGCCTCTTGGTTGATCATTAAGTGTCCAAGTATACCAAAGCTGCTCGTTTATTTCCGTTGTAGAACGGATGAACTTGTACAAGTGATTGCACTAATGCTCCATCATTCCTTGTATGATTGCGAATATTTCGACTTGAATGTCGTTCGTACAGCTACAGGGAACAGGCGATCATCAAACATGCCCCCGCTTGCTCTCCTTCCCCGAAATCTCACAAAAAGACCAGGGAAACAGATCACCCCTGGTCTTTTTATCATGCAAGAATCTGCATAACTATAATGCAATCTCTGTTTTACTTGATCTTCTGCCTAGAGAAGGTCT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGTTGCATCCATACTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.80,-2.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 25082-24848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVX010000019.1 Thermoactinomyces sp. CICC 10523 NODE_19_length_30627_cov_3.368907, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 25081 30 100.0 38 .............................. TAAAACCATCCCTCGCGGATTTGACTTTCCTTCTCTTT 25013 30 96.7 40 .........T.................... CACCATCGTAATAGCTGTACCACTTGCCGGACGTGACCAG 24943 30 100.0 36 .............................. ATTGCCATCTTTTGAATCGTGTTTACATGGCTGTAA 24877 30 90.0 0 .................G...T......G. | ========== ====== ====== ====== ============================== ======================================== ================== 4 30 96.7 38 GTTTAGGAACTACCTATAAGGAATTGAAAC # Left flank : CCGCATGGAACTTTACAAAATCCAAAAACATTTGATTGGGGAAGAAGAGTACGAGCCTTATAAATCGTTATGGTAGGAGGAACAATGGCTTGTTCGTCATATTGGTCTAATGACGTGAATCAGAAGAGGGTTGCCAAGGTGTTGAAAAAATGTCGTGTCTATCTCCATTGGGTACAAAATTCCGTGTTTGAGGGGGAAATTACTCCAAGCAATCTTTATAAGCTGAAACACGAACTTAACCGATTGATCGATAAGAGTGAAGATTCCGTTATAATTTACACATTTAGGACCTTAACCTATTCCAAACGGGAAGTGTTAGGGTTGGAAAAGAGTCCATTGGACAACTTCTTATGACACTTTCGTCGTCGATCGGAAGTGGTGCAAAAAACCCCGTGGATCTACGACATTTTTTCTTTTATTTTTTAATTCATTTGTTTCTTGAGTGAATAAGAGAAAAAGAATGTGCTAAAATAAAGGAAAATTTTATGCGGGTTTTCGGG # Right flank : TTGCTCTCTATCCCTGTCTTTCTTTAACGTGGATTGGAAGGGATGGCAGGAAAAACGTCTCCTGACAAAGAGTGTGAACCATTATGAGGAGGTCACCGGCTTTGGTAACCACTTTGGTAGGAGTAAAGCCGGTTATATCCGGTTTGTAAGGATCTCGATCAGCAGGTTGGGTTTTGACCCATTCAACGAAATTTCTGTACAATTCAGGGATGCACTGAAATCCTCCCATATCCATATCGGTATCCACGAGCGATAAAATCCCTTGGACATTAACGGGAATCGGGTTTAATGAAGTATCGATATCCCAATGGATAAAGCTTTTGTACTCATGACCAGGTTTTACTGGAAAGTTAAGGTTACACCGGTCAATGGTCACCCATAAATGTTCTGTTCCCCAAATGTCAACAAAGGCGTTATAGATTTTTTCATTCATGCGATTGTCCCACAGGTACTGATGATGGTATAACTCAACCATTCCGGTACCCGCCAGCTCTTTCATC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGGAACTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA //