Array 1 823-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMZ010000113.1 Phocaeicola vulgatus strain DFI.3.23 HAOBEGEE_113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 822 47 97.9 30 ...A........................................... AAGTTTTTAAAAGTCCTTCAGTACTTTTAT 745 47 100.0 30 ............................................... AGTCCGTTTGAGAATGAATGATACTCCCGT 668 47 100.0 30 ............................................... TTCTTTCTTTGTCTGAAAGTTTGACGCAAG 591 47 100.0 29 ............................................... CCACTCTTTTAGACCTACATGTTGCGGTT 515 47 100.0 29 ............................................... CCACTCTTTTAGACCTACATGTTGCGGTT 439 47 100.0 29 ............................................... CTCGAGGTCTATCTTCATTGTGGGATTCG 363 47 100.0 30 ............................................... TAGAATACAGAGATTTAACCAAGTATTTAT 286 47 100.0 30 ............................................... ATAGCAATACTATTGAATTTGACGATGAGG 209 47 100.0 30 ............................................... ATGACAACAGAAACACATAATTGTCTATTA 132 47 100.0 30 ............................................... TAAGAGTTGGAAGTTCGGTCGTTCAGATTT 55 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 11 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTTTCAGCTAATAT # Right flank : CAAACAGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 21376-19638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMZ010000079.1 Phocaeicola vulgatus strain DFI.3.23 HAOBEGEE_79, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 21375 47 100.0 30 ............................................... AAACAGGGATATAATAATGGTATTCATCAC 21298 47 100.0 30 ............................................... CTGAGTGATTTTCTCTTCCGGTCGCTTGCT 21221 47 100.0 29 ............................................... TACTCGTAGGAGTTGAACGGGGAATCATT 21145 47 100.0 30 ............................................... GTGAAGCGGTTACAGTCAGTGCGCTCCTGA 21068 47 100.0 30 ............................................... ATGCGGAGAAGAAGGGATATAGCAGTCGTC 20991 47 100.0 30 ............................................... ACTTCGTCCGAAAACGTGGTTTGGATGAGT 20914 47 100.0 30 ............................................... ACCGTTACAATGGAACATACTGTTTGAATA 20837 47 100.0 30 ............................................... GACATCGTGAAGTCAATCACAGGCGAGCCG 20760 47 100.0 30 ............................................... CCTGGCTTCTGGTCGTCAACGCTGTACTTC 20683 47 100.0 30 ............................................... CCAGCGCTGCAAGTATTCAGTTGCACGGAG 20606 47 100.0 29 ............................................... GGATCCAGCCAGAGCGGCAGAACCTTGAA 20530 47 100.0 30 ............................................... ATCCGTCTCAATCATATTCCCTTTGCCAGT 20453 47 100.0 30 ............................................... TGGTTTATGCTAATGACGAGTTCTGTATGA 20376 47 100.0 30 ............................................... AACAAGGACAATAAAGAACTATACAAACTT 20299 47 100.0 30 ............................................... TGACGAATCAAATGTTATGTTTATCTGTAA 20222 47 100.0 30 ............................................... AAGCGCATGCGAGAAATAAAGGACAAACGT 20145 47 100.0 30 ............................................... TCTCGTGGTGTATGGCGACCCGGCACCGGG 20068 47 100.0 30 ............................................... GCAGGACCTGCAGCGCTGCATGGAAGAGAT 19991 47 100.0 30 ............................................... AAAACTCGGTGCTGGCCAATCTCACCAAGA 19914 47 100.0 30 ............................................... TTCTATTTGAACGGTGTTAAGTTGGCTACC 19837 47 100.0 30 ............................................... GTTCAACGTGTTCATTGTCGGTAAGTATCT 19760 47 100.0 29 ............................................... TTCAAAAGGTGGCACATGAGATTGAACGC 19684 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : TTCATCA # Right flank : AGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //