Array 1 23809-25366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERMH010000100.1 Trichormus variabilis A2 NODE_100_length_25386_cov_88.632501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 23809 37 100.0 34 ..................................... TTGTGCGTCTTTTAAGTGGGGGATATAAGCGAAT 23880 37 100.0 37 ..................................... ACGGTCAAGGCGAAACCATACTGCACGCCCCTAGTGG 23954 37 100.0 38 ..................................... TAGCGATATCACAATAACTTTACCAGTGGTAACTATTG 24029 37 100.0 33 ..................................... TTTGCTAAAGCAAAGACTCAACAAGAAAGTGCT 24099 37 100.0 36 ..................................... TGAATGGCAAGAACTAAAAACTTATGTTTTTGATAA 24172 37 100.0 35 ..................................... TAAAAACACTTCTCCAACTGGAGGAAGAACCATTA 24244 37 100.0 36 ..................................... ATTAACTGAAGCCGTCCCCAGAGATTTTGTTTAAGC 24317 37 100.0 34 ..................................... TGCGATCGCGTCTCTTAAGACTTCGGACTGGTTT 24388 37 100.0 38 ..................................... CTTCATCACCTCCTTAGCGGTCGATACGTTCTTGTTAA 24463 37 100.0 35 ..................................... CAATAAAAAGACAGGTGTACTTATGACGTTTAGAA 24535 37 100.0 38 ..................................... ATTCTTTGTATTCTCTCAGGATGAATCAGCCTCACCAC 24610 37 100.0 36 ..................................... CTCAGGTATCTTTCCTGAGCGAATCTACGGCGTATA 24683 37 100.0 37 ..................................... AAAAATAGCTGAAGCCGCCAAACGGGGGAATGATGCA 24757 37 100.0 34 ..................................... AACGACCCAGATAAAGCCAGCACAACAACCGCAT 24828 37 100.0 34 ..................................... GAATGGATGATGCTTCTTTGTACCATTTAATGGC 24899 37 100.0 33 ..................................... CTCAGTTGCCACCAAAGAGGCGGGTTTAATTTT 24969 37 97.3 37 ...................A................. TATCGTATTTTTACTATTAATTCTATGCTTTGTTCTG 25043 37 100.0 34 ..................................... TTTGTATACACCCGCCTTCTCTGCCTGTAATCTG 25114 37 100.0 35 ..................................... GTTTTTTTTGTACGAATCCTAGATAAATATTTATT 25186 37 100.0 36 ..................................... TACCCCCTGGCATCCCCCACTGGTTCTTCCCTGGCA 25259 37 97.3 34 ...........................T......... TTGTGCGTCTTTTAAGTGGGGGATATAAGCTAAT 25330 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 22 37 99.8 35 GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC # Left flank : GCTATTGTCACACTTGCCAGTAACTTGGAAATGAGTGTAGTGGCTGAAGGTGTAGAAACAGTCAACCAGTTGGTACAATTACAGTTATTAAAATGTGACCAAGCCCAAGGGTATTTGTTCTCAAAACCCTTAAGTAGCGACAAAGTTAGCTTGTTATTAGCTGCAAAAACACAATATTAGAACACAAAATCTTGGCTTATCCGCCATATTCAGTTTGGAATCAGAAAATTTTACGGAAACAACGAGCGATCGCGTCAACCTATAGGTGTTTTCCCGTTAATCTCAATTTTTATAGCTTAATGCCTTATCCTCTATACATTTGAACGCAGTTGACCTCTTTCCTGGGTTGACGCAACTCCTGAAAGCCTTGCTATGACTAATTTCTAGTATTTATTCTTATTGTTCCTCTTGACAACCCAATGTCTGAAAAGTTATCTTTGCCACAGATTAACGCAACTGAACCTTGAAAACCAAATACAGCAATACTTCGGCAACTAGTC # Right flank : ACCGTCAAGGCGAAACCATA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 800-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERMH010000215.1 Trichormus variabilis A2 NODE_215_length_799_cov_7.734104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 799 37 94.6 36 T........A........................... TACCCCCTGGCATCCCCCACTGGTTCTTCCCTGGCA 726 37 100.0 38 ..................................... ATCTTGCTTGGTAAATCGATGCGGCGGAAATTTGCCTT 651 37 100.0 35 ..................................... AGACGGATACATCGAGTGGGAGCTTAAAAATCCAA 579 37 100.0 33 ..................................... TACCACGGTAACAAGTCAAGCGATCGCTGCTAA 509 37 100.0 31 ..................................... CTCCAAGGTGTATACTATCAAGTATTTTTAG 441 37 100.0 36 ..................................... TGTTCCTGGGTTGGTGGGGAATGCCTTAGTATTTTC 368 37 100.0 38 ..................................... GCATCTTGGGTGGCATTTGCACCAAAAACTTGAGTTAG 293 37 100.0 36 ..................................... CAGGTATAGAAACACCTGTAGTATAGGTTTTACTAG 220 37 100.0 38 ..................................... GCCAACCAACTTGCCACACTCAGGGATCGTTCTGCTCA 145 37 100.0 36 ..................................... CAGGTATAGAAACACCTGTAGTATAGGTTTTACTAG 72 37 97.3 0 ...T................................. | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 99.3 36 GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : CGCCAACCAACTTGCCACACTCAGGGATCGTTCTGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 1 17562-17380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERMH010000031.1 Trichormus variabilis A2 NODE_31_length_68670_cov_91.518180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 17561 36 100.0 37 .................................... GATTTTGAAAGGCTGCATCCATTCTAGATAAGTTGGA 17488 36 100.0 37 .................................... GACTACTCTCATCCAAAGGTACAGATGGTAGTGATAG 17415 36 97.2 0 ..........................T......... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 99.1 38 GTTTCAACGACCATCCCGGCTAGGGGCGGGTTGAAA # Left flank : TTTAATTCACTAATCTGAACCTTGAAAATATAATATTTGTATAACAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTACTGTGATAAATCTGGGTTAGTTTGGTAGTTAGAAGACTGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTGTAGAATTCTATAGATGGGATAGGTGCGCTCCCAGCAATAAGGAGTAAAGCTTTTAGCTGTAACTGTTATTTATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCCAAATATTTTTTTGGCGAATCGAAGCGGGGTCAAAATCCCTGGGGACTTGCCAAACTCTGAAAACCCTTGTCCTGTATTAAATCAAGGAATCATCTTGTCAATTGATTTATTTTTTTGATTTTCGGCACAAGCAGCTTTTTCAGGGACGTGTCAATTAGACATCTGAAAAGCTTGTATAACAAGGGCCTAGACGGGAACA # Right flank : AAGTTACAGTTATTAGGTGGGTTGAAAGTAGTAAATGCTTGTTATTTTAGGTTTAGACCTCAAAAAAATTACAGATATAACTTCGAGAGCTAATGTAACCAAAAATAATACTTAGCCCAGTGGAGTGCTACTATGTAACTGCATAGAGGAAAAGACGATGACAAATAATTTGTCGCTATGATATTTATGACAAATATTTTGTCGCTACAGACAAATAATATGTCGCTCTACATATAACCAACAAAAAAGGCTTGGTCGGGCCAAGCCTTTATGTATACCAAGCATTTACTACACCAAGCTTAATTTAAACCCTCTAGCACTTTAGTTCATCTGTCTTTAGACTGTATGCAAATTCTTTCAAACCTGGTATGAACTGGCATATTTACATACAAAAAAGGCTTGGTTCAACACCAAACCTCGATAATTGCTGTGCTTAACAACGTACTAAATTAATTTAAACTGGATTGTTGTCCTTATCATCTTCCTTTAGTATGTGTTGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGACCATCCCGGCTAGGGGCGGGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 55870-53364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERMH010000033.1 Trichormus variabilis A2 NODE_33_length_65509_cov_88.419054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================================== ================== 55869 37 100.0 34 ..................................... TGGTTTTTCTCGCGTTATGAATGTTTTTGCTTTT 55798 37 100.0 34 ..................................... AACGTTATGCCACTTCAAGGCAATAGCTTCCGAC 55727 37 100.0 32 ..................................... CTGCGGTCAATTGCCTTTGTGCATCAGTTTGA 55658 37 100.0 34 ..................................... CTAACATCGCCCTAGCTAAACCAATTAAATTCAA 55587 37 100.0 39 ..................................... TAAGGTTGAGCTAACTAATAAACCGCCGGAAGAAATAAC 55511 37 100.0 34 ..................................... TAACTTATTTCTAACTAGTAACTGAAGTTGATAA 55440 37 100.0 34 ..................................... CAATAATTATTAGTATTATTTCCATTTTCCTCCT 55369 37 100.0 34 ..................................... CAGTACAAGATGCTAATACAATTACTATTCAAAA 55298 37 100.0 40 ..................................... AAGCGTAAATCCGTTTTTAGCAGGTACATCTGGGGCAACG 55221 37 100.0 33 ..................................... AGGAACAATTGTTCCTTAAGCCTATGCCATCAG 55151 37 100.0 36 ..................................... CGAATCCCATCCTCTCCGTTATTCCAGCGATTTTAA 55078 37 100.0 36 ..................................... CAAACCCTTGCTGTATATGACTTGATCCAGATGATC 55005 37 100.0 36 ..................................... CAATTAATTTGGAATGTTGAAAGCTTTCATGGCTTA 54932 37 100.0 34 ..................................... ATGCTTAGTCTTCCGCTACATCACAGAAAGACTA 54861 37 100.0 38 ..................................... TTAGTTTTTTCTAGCTCTTGTTGTAGGAGTTGAATTTG 54786 37 100.0 34 ..................................... AGACTAGTCCCGGCAAAGTGGCGGAAACAGGAAC 54715 37 100.0 37 ..................................... TGCGGCAACAGTACATAATGCTTTTCAACTTTCAAAT 54641 37 100.0 33 ..................................... TCTTTGGCTTTTAATTCATCTGGTTCTGGTGTC 54571 37 100.0 35 ..................................... GAAGCATCTCACACCAGATGGCAAACTACAGCAAC 54499 37 100.0 36 ..................................... ACTAGTACACCCTGGGTGGCTAGAGACACGCTAAGA 54426 37 100.0 34 ..................................... AATTATTTTCTTGATTGGCTGCTGTATGGCTTTG 54355 37 100.0 37 ..................................... AAGTCGGTAGTGATTTTAAGAAAGTTATCCTCTGCGG 54281 37 100.0 42 ..................................... TTAGCTTAAGCCTATCCCTGACTATTCCCAGCACTTTATCAA 54202 37 100.0 34 ..................................... AGCAGATGACCACTCAGACCAAGGACGCGGAGAG 54131 37 100.0 33 ..................................... CAGGAATTGCAAAATCTTCAGGTTCATTAGTGA 54061 37 100.0 34 ..................................... CTATATAGTTGTTTTGGATCTAGGTCTAAAAGTA 53990 37 100.0 35 ..................................... TAGAAAAGCTTGGTCAATGTCTCAAGAACTTTGGG 53918 37 100.0 34 ..................................... CATTAAAATTCAAAAACTAGGTGCAGACGATCGC 53847 37 100.0 34 ..................................... CAGAAAAAAGATAGAAGCCGATTTGCGGGAAGAC 53776 37 100.0 34 ..................................... CGCCTACGAGGGTACAGAGTTCGCCCCCATGAAC 53705 37 100.0 35 ..................................... ATCGCTTAATTGTTGCTGTACTAGTGATGCGGCTA 53633 37 97.3 196 ....................................T GGCGCAGCTAGGACACTTGATTCTTCCATTGCCTTGTTTTAGTGTTAGTTCGACGAAACCTAACCCCAACCCCTTCCCTACAAGGGAAGGGGCTAAAAATCCACAACCAAGTACCAAATAATCAGGGTTTTAAGCCTCTCCCCGCGTCGGGGAGAGGTTTGGAGAGGGGTTATTCCGAATTTATCAAACCCACGTT 53400 37 89.2 0 .......C......................C....CA | ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================================== ================== 33 37 99.6 40 GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Left flank : TGAAAGCATTACAGGATTTACCCTGTAATTTGCCACCGATTTTAGTTATTGACCAACAATTAAGTCGCACTCAAGTTACTTCTCGCAGTAGACTGACTCATCATAAAAAGCAGGAGTCAGAATCCATCACAGATGTGGCAAAAGCGATCGCTACCCAAATTGTCCCACGTTCCATCTCAATGGAAGACCTGTTAACTCAAATTCATCAAACTTTGACTCTCAATGAACGCTAAGGAGTGGCGAGGATGAGCGTCAACCTCTAGGTGTTTTTTTCCCAGTACCAAATTTTACGGCTGAAATGCTTATGCTGTAAGGATTTGCATCTGTTTGGCTTCAGTACGAGGTTGACGCGATCGCTTGAATCTCTTACCAGGGTAGCTTTTTCGCTATTTTTTAAGCTGCTACTCTTGACAACTCAATGGCTGAAAAGCTACCTTAGGTTCAGATTGACGCAACCGCACCTTGAAAACTAAATATAGTAAGCCTTCTAGACCCCGGCT # Right flank : AACTCTTAATATCACCTGTACCTACAGCCGCTTTACATAGAGTTTTAAAAAACAAACCCCGACTAATTATCTATTTAAAGATAGAGGGTAGAATACTAGGAGCCAACCATAAACCGTAACCAATAAATGCAAATACGGCTGTAATGACAGCAGTAACGACATAGCTGAGGCAAATTAGTAAACCATCAGATTCAATTGTGGCGATCGCTAATAATAAAATACCTACAGTAGGTATCGGGTTAGTTAAGGGAATTGGTGAGATGAGTAATATTGTCAACCAAGATATACAAAACCCATTGATACGCCAAGTTAAAGGGTTATCAGCAATTTTACTTAAGCGGGGACGGGCAATTTTCTCTACAATCTTGGTGACACGCCGCAGATTTTGAAGAAGAAACTGGGCAAAAGGACGGGGGAATTTATAATGAGCGATTTTTTTAGGTAGCCAAGGCGATCGCCTACCCAAAACCATCTGTACCGATAATATCAGACAAGCAGCA # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 6132-9165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERMH010000042.1 Trichormus variabilis A2 NODE_42_length_55522_cov_91.875575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6132 37 100.0 35 ..................................... TTAAAGACTGTACTTCATAGGAGATTTGAGATAAA 6204 37 100.0 34 ..................................... AAGTGTACAGGCAATAGTTATTCCTATCGTGATT 6275 37 100.0 34 ..................................... CTGACGCTGTAAATAAACGCGCTGGTAATCCTGG 6346 37 100.0 34 ..................................... GCGAGACTTGCAATCATCTGGTAGCTCATCTGAA 6417 37 100.0 32 ..................................... ATCATTAGGGGTGAAAACTATATATAAAGTTG 6486 37 100.0 37 ..................................... GTAATCAGTTGAGTACCCAGTTGGAGGCGCTGCGGTG 6560 37 100.0 35 ..................................... GAGTACACTAGGTACTAAAACAATCCACCACCGAT 6632 37 100.0 35 ..................................... TTCTTGGAGACTTAGACGACTCCATAACATTACTG 6704 37 100.0 34 ..................................... AGGGGAAAAATGTTTTTCCCTGCTTAGTGATAGG 6775 37 100.0 34 ..................................... GTCCGCGGGTTTAGATTTGTACTGAAATTCCACG 6846 37 100.0 32 ..................................... TTTCCCATCGTAGATAAATAGTACCTATGTTA 6915 37 100.0 33 ..................................... TACTCAATAGCTGAACAAGCCTCAACAAAGACA 6985 37 100.0 34 ..................................... ACATGATTGATAGTCTTTGTTGGCTTCAGATTGT 7056 37 100.0 34 ..................................... AAAACTAGTGCCTTGCAGCATAGCCGTGAAAGAG 7127 37 100.0 35 ..................................... CGCCGATTACTCAGCAACCAATATCTCAGTCAAGT 7199 37 100.0 37 ..................................... TTTCTGAGCTTCAATTTGAGCTATTTGATCACGTAGA 7273 37 100.0 33 ..................................... AGAGAATCAACATATTGCTGACACCCACACAAA 7343 37 100.0 33 ..................................... GAGTATTTTAATTAAAAATGAACTTAATTAGAG 7413 37 100.0 36 ..................................... AATCCCTCTGCACCACCTGGAATAACCTTAACCCTT 7486 37 100.0 34 ..................................... TAAAGAGGAAAGGATTGTAACTGTACCTGCTTTA 7557 37 100.0 33 ..................................... ACGCAAAAGGCAGCTATGTAAAGTCTGCTACGA 7627 37 100.0 34 ..................................... TACTTTCTTGCGTAAGTTGAAATACGAAACATCA 7698 37 100.0 35 ..................................... AACGTTATGATGGGTCTGGCAGTTCTTCTTCTGGG 7770 37 100.0 36 ..................................... ATATATGATAAATGGGCTGAGAGTAACGGTGAACTA 7843 37 100.0 38 ..................................... CGGGGAAGCTATCTCAATACAGGAGAAAAAGTTCATCC 7918 37 100.0 34 ..................................... ATTTTGAAGCTTAAATTTTACGCCGGAGGGTAAT 7989 37 100.0 36 ..................................... ACTCTCAAAAAGAGTACGCTTTTTTAATTCAACAAA 8062 37 100.0 35 ..................................... CCTGCTTTGCATCTTCATTTAGTAGTCGTTTGTGA 8134 37 100.0 33 ..................................... TAACTCGGACGACTTACGCATGGTAACTTTGGC 8204 37 100.0 34 ..................................... CAAACCCTATGTTTCTAAAGTTAATCCCTTTGTG 8275 37 100.0 34 ..................................... TCCGACCAAGAACCGCCAACTTCTCCGTAATCTG 8346 37 100.0 34 ..................................... TTCATTGTGTTAATCGCTAGCCACTGAAAATCAT 8417 37 100.0 35 ..................................... GTAATTATCGACGTTAATACCGTCGTGTATAACGA 8489 37 100.0 34 ..................................... AGAGCATCTGAAGGCTGAAAGTATAGCCAAAGCC 8560 37 100.0 37 ..................................... AAGAATCCTAAAGAACGCCAGAAAGCAAAGATTACCG 8634 37 100.0 34 ..................................... CGAAACGGATATTTTGTTAACAAATCCTGACCTA 8705 37 100.0 33 ..................................... GATGCTAAAGGCAAGGTTAAATCCCTATATCGT 8775 37 100.0 32 ..................................... ACTGGTGCATATCCATGTTTCTCTGCTATATC 8844 37 100.0 34 ..................................... TGGGCGAGAAAGCTTGATGATTTTCTAGAAATAT 8915 37 100.0 34 ..................................... TTCTTCCCAGTATGAAAAGCCAATGGCGGAAACG 8986 37 100.0 33 ..................................... CACGTATTACCAACAGCACAAAGACCGCATAAA 9056 37 100.0 36 ..................................... CCAATATATCTGAATATTGTTTCTTAACCGTATTAT 9129 37 94.6 0 ................................A...T | ========== ====== ====== ====== ===================================== ====================================== ================== 43 37 99.9 34 GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Left flank : CCCCTTTGGCAGAAAAGGGGATTTATTTGGTTTTCTCTACGGCTTACCACCAAAATTAAACAACGGCGTATTAATACCCACCGCAGATACTGGCAATTCCACTCACTACGAAGTTTTTTACCGCTATTTAGTCAACGACAACATCGCCATTACCCCTGGCTTTTTTCTCGTCACCGACCCTGGTCATATTTCCAGCAACAATGATATTTTCATCGGTGCTATCCGTACCACCTTTAATTTTTAAAATATTGCGTCAACCCATAGATGTTTTTCTGCACAGCTTCAGTTTTTTGCCTCTATGCCTCATCCTGATTAGGTTGCAGCCCATAACATTAAAATTGGGGTTGACGCAATTACCTCTAACCTTCGCCATAACAGCTTTTGAGTTAATTTTTACCATACGCTTCTTGACAATCCCATGTCTGAAAAGTTATCTTGGCTCCATGTTGACGCAACTGAACCTTGAAAACCAAATACACCAAAGCTTTGAGAGCCAAGCG # Right flank : TGATTCTGCTGCGTAAGTACTCTCAACAACAACCCTGACTTTGCGGAAAACCCAACAGGGTAGCCAAAGCAATACCTAAAGGCGATCGCCCAAAATATCTACTCATTCTTTTTGTGTAGAAAATTAAACCACTTACTTCTAGGCAACTAATCAAAGCGCGAGTATAAAAGAAAAAACAAACACAAATTAATACCTGAAATTAACAGAGAAATAACATGGCAAATCGCTCGCGCAAGCTAACGCCAAAATCTTCTAAGCAAAATGGCTCTGATTTGGAAGCGAAGAAACCTCAAATCCAGCAACAACAGGTAGGTAATACCGATTTGCCAAAAGAAGGTGATGGAGGAATTAATCAAACCCAGATACAGAAAGCGATTTCTCCATCAAAATCCTATAAACCATCCTCAATAATTGCGATCGCCATTTTACTTACAAGTGCTGGCTTAGTGCTGAGTTGTACCTGGATTGGAATTCTGTGGATATTTAACCCAGAACAGGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 41937-44355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERMH010000058.1 Trichormus variabilis A2 NODE_58_length_45803_cov_91.033329, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 41937 37 100.0 33 ..................................... ATACCTAGATTCCCACCGAATACAATCCAATTG 42007 37 100.0 37 ..................................... AATTCATTAAGCCTAGACGATCTTGTCTGCACTCGAT 42081 37 100.0 44 ..................................... GATGAGCTAATTTCCAATGCCAGTCTTTACGACGGTTGGCGATG 42162 37 100.0 34 ..................................... AGCAATTCTCAAATCAGCCCGCCACAAGCAATTT 42233 37 100.0 35 ..................................... GTCAATTGGTTTAAGTTGTAGCACTCCTATCTTAT 42305 37 100.0 35 ..................................... ATCGCAAGAGATGTAACGCCTAAGAGTAAAAAAGA 42377 37 100.0 36 ..................................... GTAAAAATCATGATTTTTACTATTGAAAAAATCCTG 42450 37 100.0 39 ..................................... CAATTTAACTTATTTGATAGTGATATCTATCGGTATATA 42526 37 100.0 35 ..................................... AAAGAAGTTGCAAGTAGAGCTAATTTAGCAATCAC 42598 37 100.0 41 ..................................... ACTATGTATGGGGGTGAATATTAGTGGCATTTCGTCCACCC 42676 37 100.0 34 ..................................... ACTATTCTCTGCCGCTAAATCAAAAACAGAGCTA 42747 37 100.0 35 ..................................... CAACTTACTGGGACAACCGCAGCAACCACCTTAAT 42819 37 100.0 33 ..................................... GAGTTGGTTCGACTGATAGTTGATTTGAACAAG 42889 37 100.0 33 ..................................... GCACCTGAGATGACGCAAGCAGCAAAGGCAAGC 42959 37 100.0 32 ..................................... AAAGTTGGTTCCGCCATAAAACTGATTTTTGA 43028 37 100.0 34 ..................................... GGGAACGCGCCCTTAAGGTTTATGAAATTGTCTA 43099 37 100.0 33 ..................................... TAAATCGGTCGAGCTAGTAACGCTTCGGCTTGC 43169 37 100.0 34 ..................................... AGTGGTATCTTTGGCACAATCTTCAGGATTGTCG 43240 37 100.0 33 ..................................... CGAGTTACCGCCCCTTTAATCGGTAGGGACAGG 43310 37 100.0 33 ..................................... GGAATCAGGGAAAGGGTTAGGACCTGCAAGATT 43380 37 100.0 35 ..................................... AGCGAATTAACACTTTATTAACCTTCTCTATTTGT 43452 37 100.0 35 ..................................... TAAATTCCTTAGCTAAATCCAATAAGGCCAAGGAA 43524 37 100.0 33 ..................................... TATGGAATCCTGGCAACCTACGGGCTGAGGAAT 43594 37 100.0 36 ..................................... AGAAGACGGGGAGGAGGAGAAATGCAAGCTAAAACG 43667 37 100.0 34 ..................................... CTGGATATTTATCCAAATGCCGATCCTCTATCGA 43738 37 100.0 33 ..................................... AGCTGCGCGACATCGCCAAGTATTACAAAATCC 43808 37 100.0 34 ..................................... CTAGCGATCGCCGCCGCCTTTACCCCTTCTAAAT 43879 37 100.0 36 ..................................... CCTATACAGGGTTCACAAACACTATCCAATCTAGGG 43952 37 100.0 42 ..................................... AAAAAATCCAAAAGGGCATATATCTCTTTGTATCGATTCGAT 44031 37 100.0 34 ..................................... AAGTAAGCCAATACTGAAGTTTTCGTGTTATATT 44102 37 100.0 35 ..................................... CAACCCAGAATCGGCTTATCATACACCAGAGATAA 44174 37 100.0 37 ..................................... TCCTTAATTGACTCTAAAGCACTATATACAATATCAA 44248 37 100.0 34 ..................................... GCAACATTCGTTTCTACAATAATATTGGTGTAGC 44319 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 34 37 100.0 35 ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AAGATAAACCAATCAAATATCCCCATATGTTCCGTGCTAGTGAGATTATGATTCTCACTAAAACTGATTTGTTACCTTATGTGCAGTTTGATGTGCAGCGTTGTCTAGAATATGTACAGCAAGTAAATCCCAATATGCAGGTTTTCCAAGTTTCTGCAACTACAGGTGTGGGATTAGATACTTGGTATCAATGGCTAACGCAGAAAGTAGCCAATTCTCCACAACCAGTAGTGATGTAAGCAGTAACTTTGCGTCAACCCATAGATGTTTTTCCAAACTTATGAGATTTTCTGCTGGAAAAGCTTATCCCCTATGGGTTTGAAGTGGTTTTGACTCGCTATGAGGTTGACGCAATCACCAAATCTCTTACAGTCACTGATTTCCACATATTTTTTAGGTACTACCTCTTGACAAAGCGATCGCTCAACAGCTACCTTAGTCACAAGTTCACGCAACCGCACCTTGAAAACCAAATATATCAAGCTTTCCATGCCTGAGCC # Right flank : CGTAGGAAAAAATAGATTTGTTGTACTCGCAACATTGAGTTCCAATTAATACAACGCGAATCCTTAGCCCCTAAAATCGAGAAATATTGCAACTCTTCATCAAAAAGCAATAACAAAGCAACAAAACTGTCATAAATGCTATCTAAAGTAATAATAAACATAGTTTCCTCGCTCAAGGCCATGCAAAACCAAGTACACGATGAATCTCAACCCTTAAATCCTAAAAACCAGAATCACGCACCTTGGAAAAAAGCGGCTGCATCTCTATCACTAGTACTGCTGGGATCTGGTATGACTTTAGCTGGTGGATATTTAGCAGGAAACCAGCAACAATTGGCACAAAAAGCATCTGACTTGGCCGTGAGCCGAGTAGATGCAGCACCGCCATTAGGAAATAACACAGACCCCAACTTTGTAACTCAAGTAGTACAGAAAGTTGGGCCGGCTGTTGTGCGTATTGAAGCGTCTCGGACTGTCACATCTCGATTACCAGCCGAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 42547-42730 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERMH010000052.1 Trichormus variabilis A2 NODE_52_length_50626_cov_92.921475, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 42547 37 100.0 36 ..................................... GACAAAGGTAAAAAGACTTGGAGTTTGGAGGAACTT 42620 37 100.0 37 ..................................... TTCTCCTCCCTCCAGCGTCGCACCACAGGAATACTCA 42694 37 97.3 0 ..............T...................... | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 99.1 37 GTTTCAACACCCCTCCCGAAGTGGGGCGGGTTGAAAG # Left flank : CGATCGCTGCTTATAATTCTCGCCGAAGAACCTGATTGACAAAAAGCAGAACCTTGAAAATAGAATAGATATAACTAATAGCGCCGCAGTTCATGCTTTGTTCAAAGCCTCTGTACTGTGTAAATGTGGGTTAGTTTGACTGTTGGAAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTGTCCCTTGAGGACAGGAATAAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACCGAATCACCTCCGATCAAGGAGGAACCCACCTTAATTATTTATTTTTGGCAAACCACAAGCGAGGTCAATTTTCCAGGGAGGTTTGCCAAAAGTCCAAATCCCTTGTCTAGTCTGCGTTTTATTTATTGGTATGTTTCGATGATTCGCCTTGAAGGGTGAAGTCGAGAGCAGATTTAGACACCTTTGCCAAAATCACTTTTGGAAGTGTCTCTAGATAAGGGTTTGGTCGGGCGGA # Right flank : GACCTTCATGCAAGGATATAAAAAATTTTAGGTGGGTTGAAAGGCGCACTTCGTTCGGGATTTTCCCTGACCGAAACAGTACCAATAAATCAAAGCTATTATAATAACAGCTTCTAATGCCAATACACCTTGATGACTAAGTAATTTGGCAACGCGGACAACAACTTGGCAATACGGACAACAATTTGTCAACGCAGACAAAGAATTTGGCAATCGACAACAATAATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGTTAAAAAATTTATACGCCTTTTTTAGCATAACATAAATAATAGTCAATACAGAAAAGACATCTACATCTATATATATAGATGAATCGGAACGGGATTTGCTTGCTAGGATTAGATTTGTATAACATTCAGTGGTAAAAGCGGATTGTGACTGTAAAACCAGACTGGTTGCGGGTAAAAGCGCCTCAATGGGAGCGCGTTG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCGAAGTGGGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.60,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 21615-21436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERMH010000073.1 Trichormus variabilis A2 NODE_73_length_35315_cov_84.969694, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 21614 35 100.0 37 ................................... GGGGGCTGGGTCATCATATTGATCTCGCTCAGTCCGG 21542 35 100.0 37 ................................... ACGATCGCAACCCTTGATTCATGAAATGCTTGGTAGC 21470 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 3 35 100.0 38 GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCA # Left flank : TAGGTGAAAGTCGGGATTTAGTGAATGATGTTACCCTTTTACCTAAAAATTACTATGCAGAATCAATGCGATGGTTAATTCGAGATGAATATGGGTTACTAACTTTACCTTACTGGGTAGACCATGTAGGTTCGCGGGGAACGCGATGGCTACGTTACGAGATTCAGAAATGTCCAGTCTTTCAACCACCTGAATTATCTTGGACTTCAGTTCAAAGTAATTAGAGGATATCTTTACTTTTGCAAGCACCTCTGCTTGGGAAATTTAAAAACTATAGAAAGTAGCCTTAATTCGTTATTCTACAAGCCTTTTAAGGATTTTATATGCTTCTAGAGTGCTTGCAATTTCCTGGAATGCTCTAAATACAAGAGTTAGGAGTGTTAAAAACTTTACTTTTGCTATGAATAGCTATTAATTTTTGCAACTTGGCTAACCTTAAAGAGTAGGTGCTTGTAAAATTGATGTAGAGCTTAGGCAAGTCAGCAAATGTGGCTATCGCT # Right flank : GGATTCCCAGAGGCGAATGTATTTACGGGTTATTGTCTTTGCTAGAAATATGTTGTCAGTGAAGCCAAGATTAGCCCTCTTGATTACCATCATTCCGAGAAATTTTACTGAGAATTTTTTCCCACTGCTGAATCTGGTTCTGTATTTGTAATTGGGGATGGGCTTCCCCCCGCCGTAGGCGATCGCTCAAATCTTGACTATCATCAACAGACAAATCCTGACCGCTCAATCGCTCACGGTAAAGAGCAATCAGTTCGGTTAGGGCTTTTTTATTGCTTGATTATCCTCCTGGGTCAGAGAACTCACATTGACTGGGATCAGCTTTCTGCCAATTCTCTCGACAAACTCAGACCGACTTAAATCCATGCTGTCAGCGATCGCATCTAATCCATCAATCCCGGTAGGAGTTAGGGCTAGGTTAACTCTCTTCTTTACCTCATCGTACAGTTCTGGTACGTCTTTTTGACCTTTTTGCCCTTTCTTACCCATTGCCGTCTACT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 24485-24234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERMH010000079.1 Trichormus variabilis A2 NODE_79_length_32402_cov_94.612541, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 24484 37 100.0 34 ..................................... GCTTCACACATTGCCAAAGACAATAGACGTAGCA 24413 37 100.0 35 ..................................... CGATATGCTAATAAATACAACCTATGCCATAGAAG 24341 37 100.0 33 ..................................... GTGTTACTCCTTAAATCTGGATTTAAGCCACAG 24271 37 86.5 0 ........GA........A.A...............T | G [24244] ========== ====== ====== ====== ===================================== =================================== ================== 4 37 96.6 34 GTGACAATAGCCCTTCCCGTGTTGAGCGGGTTGAAAG # Left flank : AAAGCGCGAGATTTAGCGATCGCAGCTTACTATTTACGCCAAAATAAATCTTAATTTTTGATTAAGCAAATATACTGAACCTTGACAATAAAATAAGTAATAGCGCCGCAGTTCATGTTAAACCTCTGAACTGTGAAAAATCTGGGTTAGGTTGACTATTGGAAAATAGTCCTGCTTTCTGACCCTGGTAGCTGCTCACCCCGATGCTGCTGTTTCCGAACAGGAATTAGGTGCGCTCCCAGCAATAAGGGCGCGGATATACTGCTGTAGTGGCTACCGAATCACCTCCGATCAAGGAGGAACCCATACCAATCCTTGTTTCCAGGCATTAGAAGAGATTAAAAATTTTCAGTCGATTCGCGCTTGCTTGCTGTGAAAGGATTTTAGCGTTTAATGGCACAAAAATTGCTCATTCAAACGGCAGTTGAAGAAGCTAGGAATATAGATCCGCGCTATCAACTCTGGAATCCTCCACAAAACAAGGATTCTATACAGGAAGG # Right flank : AATTATGTATGTATTCATCTCCATTAGGATGGGTGAGAGTGATAATAACCATTCACGAAAGAATGGATTGAAAATGTAATACCTAACGATAAACAGAAATAGGCAAGTTATATAAATCTTTCCGGTGCAGGACTGGTTGAAATATAAAGATTACAAGATGTGGGTATGGGTTGAAAGGGTTCAAATCCGTCTGCTTAACTTTTGCTGCCAAGCATAGTGGTTAGAATAATTGTGTGCGAAATAAAGAACAAAAGTTTTTTGTTTAACCAAGGTATAGCAAAAGTTTTTAGAGCTTGAGCTAAAATTGAGCTTATGGTCTTCTATTTGATAGGACTGATGTTGACCAATCACCCCACACAATCGATTAGTCTCAAATATTGCGACATTAATTTGTGAACGGTTATCTTAAATGAGCCGCGACACTAATTAGTGAAACAGCGACATTAATGTGTGAACGGCGACATCTAATGTGTGAATGTACAACAAGCTAAGAGCTTCTT # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATAGCCCTTCCCGTGTTGAGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 58-606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERMH010000156.1 Trichormus variabilis A2 NODE_156_length_7192_cov_96.196895, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 58 38 100.0 37 ...................................... TAACAACTCTAAATAGTGAAGCTGTAAAAAATTCAGG 133 38 100.0 35 ...................................... ACCTAAAGAAGCTTTAAACGAGATTGTGAAAAAAT 206 38 100.0 33 ...................................... AAAAACTTGCAGAATGGAAAAACCGCCAGCGCG 277 38 100.0 32 ...................................... AAGTTTTCCATTTAAGTGCTAAAGCAATAACA 347 38 100.0 33 ...................................... TAGTTATACAGAGATTATCAAAAGCCCCTGCAT 418 38 100.0 37 ...................................... TAACTACTCTAAATAGTGAAGCTGTAAAAACTTCAGG 493 38 100.0 38 ...................................... TTAACAAAGATGGAAAGAAAACAAATACTTTCCATGTA 569 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ====================================== ================== 8 38 100.0 35 AGTTGCAACACCACATAATCCCTATTAGGGATTGAAAC # Left flank : ATAATCCCTATTAGGGATTGAAACTAGTTATACAGAGATTATCAAAAGCCCCTGCATA # Right flank : CAACATGAAATTTCAAACTCTTTATCCTCTCTGCGTCTGTGCGTGATAGAAATCATGCCGCATTGCATTGATGCAACGCCCAAGCCCCGATTAAGTCTTGACTTGTTCCCTGTATACCCTGGGTGTAATACCCATGAGTTTACGAAATACATTTGTGAAGTGGCTTTGGCTTTGAAAGCCGACTTGGGTACATATTTGCTCTATGGTTTTGTTAGTGCTACCCAGTAACTTTTTTGCGCGTTCAATTCGGCAATTCATGACATATTGATGTGGTGCAAAACCAGTTGATTGCTTAAATTGGCGCGAAAAATAATACATACTCATTCCTACTGCTGTGGAAATATCAACCAAAGTCAAATCTTGATCAAGATTTTCATGAATGTAGGAAATTGCTTGTCTGAGTTTCCAATGTGAAAGTCCTTTATGATGATGGTCGTCAAGGATGGTTCCACCTGTTACACAATAGTGTTTGAGTAGGTGAATACAAAGCGTGGTCGTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCAACACCACATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 26180-28249 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERMH010000018.1 Trichormus variabilis A2 NODE_18_length_88886_cov_101.282420, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 26180 37 100.0 35 ..................................... TCTCTGCGGCAAACAGTGCCTATGCTGCGGGCGGG 26252 37 100.0 38 ..................................... TATATATTTCTCTATCGCAGACAATCTTCTGTTAATGC 26327 37 100.0 40 ..................................... ATTCCTATCGTGATTGAACTGACTATCAACGTGAGGACTG 26404 37 100.0 36 ..................................... CCTAACTTACAACGCCCCACTAATTCACAATATTTG 26477 37 100.0 39 ..................................... GATAGAGATGATTGGTCGAGGGGAAATATCTCTGGCCAA 26553 37 100.0 44 ..................................... CACTTTAGACGAAACTAAAATATATAGCGATTGTACAAGTCAAG 26634 37 100.0 35 ..................................... CTAAAACAGTTCCCTCAAGAGTGTTCCCAATCAAT 26706 37 100.0 37 ..................................... TTAATTTTGATGTTCCTTGGACGTGGTTTTAATTCGG 26780 37 100.0 33 ..................................... CTTGCATTTTGATAAAAAAGATAAGTAGAGTAA 26850 37 100.0 35 ..................................... AGGAACAATTGTTCCTTAAGCCTATGCCCTCAGTT 26922 37 100.0 35 ..................................... GGCAGATAGTGGATGGGGCGGTAGATGTTCGGCAA 26994 37 100.0 33 ..................................... TACTCGCGATCGCTGCATCCTCAACGCCCAAAA 27064 37 100.0 35 ..................................... GTGGCTGGGACTAGAAGGGCTAGCCGAATCACTGG 27136 37 100.0 35 ..................................... TGGCAATACACGGGAGTAGATGATACTTCTGAGGA 27208 37 100.0 35 ..................................... ATCCAGTAGCAGTTCGCCCTCATCATTCCAGTAAG 27280 37 100.0 34 ..................................... CGGCGGCGCTGCGGCTGGTGGCGTACTCACAGAT 27351 37 100.0 36 ..................................... CTTGCCATTTTGACCTTCCATATTGAACACCCCAAT 27424 37 100.0 32 ..................................... ACCTCAGTTGCTCTGTTCTTGATTCCGCACAG 27493 37 100.0 34 ..................................... ATTTTAAAATCGGTGCAACCGGAGTTCGGCTCAA 27564 37 100.0 34 ..................................... GAGAGGCAGATCACCTTGTTCTATTAAGTGAGCG 27635 37 100.0 38 ..................................... AAAAGATGTCGATCAAATGAAGCGGATAAATAGCCACA 27710 37 100.0 37 ..................................... TAAGAAGGAGAGGTGATGTTAATTCACTTAGTGGAAC 27784 37 100.0 35 ..................................... AAAGACTTTTTAGCCGAGACGCAGGCAGGAAGAAG 27856 37 100.0 33 ..................................... AGCTTCAACGGCGGCGGGACTAGCTACATTCCC 27926 37 100.0 33 ..................................... AAAAGAAATTTAGCGACTTCTGCATTCTGTTCG 27996 37 100.0 35 ..................................... GCGTAAACTCTTCCGCCCTTAAATTGCGAGAAAAG 28068 37 100.0 34 ..................................... GGAAGCGTCGCTAAAACTCAAGCTATTTTAGAAA 28139 37 97.3 37 ....................................C GTGCTAGCCCTCTAATCTCTGGTATCCATCGCCCCAG 28213 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================================ ================== 29 37 99.8 36 GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAG # Left flank : AGAAGATAAACGCCGTACTAAAATTCACAAGGTTCTTAAATCTTACGGACAGTGGATGCAGTATTCCGTTTTTGAATGTGACCTGACACCTACTCAGTATGCTAAACTGCGATCGCGCCTAGCCAAACTCATCAAACCAGACCAAGACAGCATCCGTTTTTATCACCTCTGTGCTTGCTGTCAAGGAAAAGTTGAGCGCATCGGCGGCGAAATGCCAATAGACACTACCGTATTTTTTGCTTAACTCGTGCGTCAACCTATAGGTGTTGGGCAAACAAACTAAAATTTATCGTCCCAAACCCTTACCACTCATGCTTTTGAACCCTCCAACACCACAATTGAGGTTGACGCAAACACCCCAAACCTTCACCATAAATACTTTTGCACCAATTTTCTCCAACTCACTCTTGACAACTCAGCTTCCGAAAAGCTACCTTAATCTGAGATTGACGAAACAGAACCTTGAAAACCAAATACAGCAAGCTTTTCAGACCTGGACA # Right flank : CCTAATAAAATTGTTTTTTCTAGCAAGTCGCCTGAGGTTTATATTATAGGGTTTTTTAGTCTGCTGAAGTAAAAATCTCTGCGTACCTCTGCGCTTTACTCCGCGCCCCTCTGCGTTTCAAAATATTATCTGTACCTCACTTAACTGGAAATCGCTATAACACAAATCTCCATAGCATTTCCTAGCTGCTGAGGTACAAATTTATCCGCGTACCCTGCGGGAAGACTTCGTCAATATCTGTGTCCATCTGCGTTTAATTATTGTCATTTGTAATTCATTAGGATAAGAAAAACTATATTAAGGATTGAAACAATAGAGTTGGGATTTGCTCCGTAGGTTGCGTTAGTTTCTATTAATACAAATCCCTATCAAGGCTCTCAAATCTGTCAACAGCTATACCTTACTCTCTTTGTTCTCTTTCACATTATCTTGTTTGTCATCATTACCATTTTCTTGCTGTTTCTTCTCTTGCACAACCTGAGTAGCATAAACTTCTACAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //