Array 1 893940-892263 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053416.1 Salmonella bongori strain 85-0051 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 893939 29 100.0 32 ............................. ATGGCTTCATTTAAATTGCCTGTTGAACCTGT 893878 29 100.0 32 ............................. AAAATGGATAAATATAAAGAACTGTTTGAGAT 893817 29 100.0 32 ............................. TGATATTCCATCAGGAGGATATGCTGGATTAA 893756 29 100.0 32 ............................. CTGATTGATTGCCTTATTTCCGCCAGTTACTA 893695 29 100.0 32 ............................. CTTCTACGTTACTTGACTCCCCTAAATAATCT 893634 29 100.0 32 ............................. CAATCTGGCACAGGAATTACAAATAACCCAAT 893573 29 100.0 32 ............................. GCAAACAAAATCATACCCCTTCGCACGGAAAA 893512 29 100.0 32 ............................. CAGGAACTCAACGAAAACCAGATCGCCAGCAC 893451 29 96.6 32 ............T................ GGGCGACGTAACCGCCGTTATTCAGACACGCC 893390 29 100.0 32 ............................. CGAATAGTTCGTCAAACTGTTTATTCAAGTTC 893329 29 100.0 32 ............................. GACGCCATCGAGGATTCCATCCAGTTGATGGT 893268 29 100.0 32 ............................. GCTGCGCAGAACGAGAAGAAGTAATGGGCTGT 893207 29 100.0 33 ............................. GAGTGTTAGAGAGTGATGGGCGGGCGCGTATTC 893145 29 100.0 32 ............................. GAATTTTTTCGGCATTTGATGTAACGGTAAGT 893084 29 100.0 32 ............................. TCGTCGCGGCAAACGTCTATCAGTGAGTTCCC 893023 29 100.0 32 ............................. TCGACGACCACACCAACAGGAACTGAGCCACC 892962 29 100.0 32 ............................. ACTCTGCTTCCTCGCCTTGATCCGATTTCACA 892901 29 100.0 32 ............................. CCTCAAAACTTGGATTTGACCCTGATAAAATA 892840 29 100.0 32 ............................. TCACTATTTACATGTAAGGCGGAAACATTATG 892779 29 100.0 32 ............................. CAAAAAACCGTCACAGGATGAATAATGAAAAT 892718 29 100.0 32 ............................. ACCGGGTATTTAATCGTTCGTTTACCCTGAAT 892657 29 100.0 32 ............................. TCTAGATAATCCCGCATCACTGCATATTGATT 892596 29 100.0 32 ............................. CCAGCGAATGGCAAATGCAGCAATTTATTAAT 892535 29 96.6 32 ..........T.................. GGAAAACGGTATAAAAATTGGGAATTAGCTTT 892474 29 100.0 32 ............................. GTGCCGACGCGATCCACGCCAATTTACGTAGT 892413 29 100.0 32 ............................. TAAATAGTGTTATTTTCTAAACGCAATGTGTT 892352 29 96.6 32 ...................A......... TGGTTGGCCTTCAGTATGCCATCAAGATAAAA 892291 29 75.9 0 ............T........C.TTTA.T | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCTATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTGTTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGCTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACGTTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTCTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 910753-909931 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053416.1 Salmonella bongori strain 85-0051 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 910752 29 100.0 32 ............................. GTAATGGAAATTGCAACGTTAATATTTTAGAT 910691 29 100.0 32 ............................. CTGTATCTCAGGCTGGAATTGGGGCGGCTCAG 910630 29 100.0 32 ............................. GGTGCGCGTCTTGGTTTTGGCCCATACTTTGA 910569 29 100.0 32 ............................. ATTCTGTTTCCAGTGTATTTAATGGCGCTGTC 910508 29 96.6 32 A............................ CGTAACTTCATCTTCGCGAGGAGACCCCACCG 910447 29 100.0 32 ............................. CCGTCTGCAACAGTAAATATCACAGAACCGCA 910386 29 100.0 32 ............................. TTACTGTATCTTGAGTTTAAAGGGGCGCGGGC 910325 29 100.0 32 ............................. AGAAAAAGAGGTGGAAGGGGACAGCGAAAGAA 910264 29 96.6 32 ............................C TGTTGATTTCCCCGCTCGCCGGGTACGCCGCC 910203 29 100.0 32 ............................. TCCGCCTGTACATTCTGCTAAGAAGTGAAATT 910142 29 100.0 32 ............................. CTTGAGCATGAACACATCATGCAGGTGACACA 910081 29 100.0 32 ............................. AGGATAAAAACGTTCCAATCGTTGAAATTACC 910020 29 100.0 32 ............................. GCGGTTTTTTTATCAGTCAGGGTGAGGGAATA 909959 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCACTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCCATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGACGATAAAAAGTGCTTTATAAACAATGATATACATTTAGT # Right flank : TTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCATCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACGCGCGCGACCCTATGCCAATTAGCGACAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //