Array 1 1078073-1082012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKIL010000002.1 Clostridium perfringens strain B20 53.CPB20.1_2_53.CPB20.1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1078073 29 100.0 36 ............................. TAATTATAAGATTTACAAGACCTTTGAAGTTCAACA 1078138 29 100.0 37 ............................. AACCAACAAGACCCCACAAAGGAGCTAACATTAATTC 1078204 29 100.0 36 ............................. TTAATTAAATCAGCTCTATATTTAAAAGCATTGTCA 1078269 29 100.0 36 ............................. AGATAACACTATAACCTAACTTTCTATGCTGAGAAA 1078334 29 100.0 37 ............................. TTAGTAACTGCACCTTCATGATTTTGCAATTCAAGAG 1078400 29 100.0 36 ............................. GCTTAAAATGTTAGATAATAATACTACTAGTTCGGT 1078465 29 100.0 35 ............................. TTACCATTAAATTTACCGTTTAACTCTCCCTCCAA 1078529 29 100.0 37 ............................. TTATAGAAAAAGTATAAACAAATTTAGGCTCTATAGA 1078595 29 100.0 36 ............................. TTCATTATAAAGATAGAAGAAAACTATCTATTTATT 1078660 29 100.0 36 ............................. ACCATAATTATAAGACTTACAAGACCTCTCTAACTC 1078725 29 100.0 37 ............................. TTGGTAATATCCCACGGAATACAAAATGGAAAAGCTT 1078791 29 100.0 37 ............................. TTTAATTGTAGATGCAATCATATCATTTTTATCCATC 1078857 29 100.0 36 ............................. TACTATCATGAAGGTAGAAAAGTTCTTGATGAACAA 1078922 29 100.0 37 ............................. AAGTACAAAAACATCTTAGATTATAAGCTAGGGGACA 1078988 29 100.0 36 ............................. ATATAATAAAGGCAAGTAAATAAAAGATACTTCTTT 1079053 29 100.0 36 ............................. TGCATGCTAGGGTTACTATGGATTATATTTATTTAA 1079118 29 100.0 36 ............................. GTTTATTCAATTTAACTTTACTATTATAACTACCTA 1079183 29 100.0 36 ............................. TTATGATTCTGCAATTCGAGAGCTTTTTGAGTACAA 1079248 29 100.0 35 ............................. TTGAATTTACCATCAAGTTCTCCTTCTAAAGCCTT 1079312 29 100.0 36 ............................. TTTTCTTAACATCAAATACCTTATTTTCATCACCTT 1079377 29 100.0 36 ............................. TTTAAAGGCTACGCTTCGCTATGTCTGCGACGCCAC 1079442 29 100.0 36 ............................. CCATTACAACCAATAACAGTCACAACACAATAAGTA 1079507 29 100.0 37 ............................. ATACAAACTATAAAAAAATAGCTAAGATTATTATTAT 1079573 29 100.0 36 ............................. AGCAAGTAAACTTGCTATATGATGTTTTTTATCTTC 1079638 29 100.0 36 ............................. TATCATACATAATATTACCGTCATTATCCAAGTTAC 1079703 29 100.0 36 ............................. CAGAAAAAATTAAAGAGCATACGAGACCAATAAAAA 1079768 29 100.0 36 ............................. TTAAAAAAGAAATTAGCTATATTCTCCGCAGTCTTA 1079833 29 100.0 37 ............................. GTTCACGATTATCAATGACAACTGTTAAGTTACTTAA 1079899 29 100.0 36 ............................. GAACTTATAAAGAGTGGTAAGAGTGTCGGAGATATA 1079964 29 100.0 36 ............................. ACAAATTTCAATATCATTAAATGGTAAATCAGTTGA 1080029 29 100.0 36 ............................. ACAATATTCATCAACATTAACACTATTTTTCATACC 1080094 29 100.0 36 ............................. AACCTAAAAATAGGAGATACAGTATAAAGAGTAGAT 1080159 29 100.0 36 ............................. ATTTTGCGTTAAAAGTGTAAGAAGTTCTACAGGGAA 1080224 29 100.0 36 ............................. AATTACTATTAACAGTTTTAAGCTCATCAAGTTCTT 1080289 29 100.0 36 ............................. ACGCATAATGACACTATATACATAATACAAAGCAAC 1080354 29 100.0 35 ............................. TTTTCTATAAGCTGTACTTTTAGCTCCACCCATAA 1080418 29 100.0 36 ............................. TTGAAAATGTAATAACTCTTATTTTAAGAGAATATT 1080483 29 100.0 37 ............................. TTAATATTGGAGGAATTAATGAGATATAACTTTACGG 1080549 29 100.0 36 ............................. TTCTAGGAAAGGTTTTAAAAGTGCAGAAGAAGTCCA 1080614 29 100.0 36 ............................. AGAATAGAAACAATAATTGGTGCAAGTTCTTGTTCT 1080679 29 100.0 35 ............................. ACAAATCATATTTTCAAAAAGGTTCCTGTAGCTCA 1080743 29 100.0 36 ............................. TTCTAGGAAAGGTTTTAAAAGTGCAGAAGAAGTCCA 1080808 29 100.0 36 ............................. CTTTTTTTTAGCTCTGCAAGAAGTAAGCAGAACAAC 1080873 29 100.0 36 ............................. AGAATAGAAACAATAATTGGTGCAAGTTCTTGTTCT 1080938 29 100.0 35 ............................. ACAAATCATATTTTCAAAAAGGTTCCTGTAGCTCA 1081002 29 100.0 37 ............................. TTAAATTTTAGCCAATAGTAGTTAGAATCTTTATAAA 1081068 29 100.0 36 ............................. TTAATTTTGCCAGAGTAATTGATTTGATTTTTACAA 1081133 29 100.0 36 ............................. ATTTTATTTTACCTGCTAGCATATTCATTTTAGATG 1081198 29 100.0 36 ............................. AACGATAACGCAGATTACATGAGTGTTGTAATAAAT 1081263 29 100.0 37 ............................. AAAGTTTTTCTAGTAGCTTCTGCTACTCCTATATATT 1081329 29 100.0 36 ............................. ACTGTTGAATCAGGAATTTTAGACAATGCTTCTAAA 1081394 29 100.0 37 ............................. CTCATATCAGTTGGGTAGGATGGGAATCTATTACAAA 1081460 29 100.0 37 ............................. TCAGAATTTTTATTAATTTCACCTGAACTTTCTTCTA 1081526 29 100.0 37 ............................. GTTATTATTTCAACTTTTCTTTTTATCTCTTCATCCC 1081592 29 100.0 37 ............................. AGAAAGAAATCATTGACCCTATAGGGAAAAGCCAATT 1081658 29 100.0 35 ............................. TTATTCCCTAAAGCGTTCTTATTCCCTTTAGGAGC 1081722 29 100.0 35 ............................. TTATGTAACTAAGATTACAACTTTTATGAAATGGT 1081786 29 100.0 37 ............................. TTTATAATGCTCTCGTTGATCATCTGTTAGTTCAAAC 1081852 29 100.0 36 ............................. TTTTGATTTAACTCTACAAGCTTTAAGCAACTCTCT 1081917 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 1081983 29 86.2 0 .................GAA....C.... | T [1082010] ========== ====== ====== ====== ============================= ===================================== ================== 61 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATAAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTAATACTTAATACTTCCAATATATATGATAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATTTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //