Array 1 4783-3691 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGME01000003.1 Listeria monocytogenes strain 57147 NODE_3_length_482802_cov_226.938, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4782 36 100.0 30 .................................... TTGGCGAGATAAGCAAAACATTGAACACTC 4716 36 100.0 30 .................................... ACGATGATGACTTTGACGATGATGATGACG 4650 36 100.0 30 .................................... CACACCAATCGCATTAGATGCTGTTGCATT 4584 36 100.0 30 .................................... TACGCATGACAGGTGAGGAGCTTATAAAGC 4518 36 100.0 30 .................................... TTGTCTTCTATCGGTTTCAACTACAAGCGC 4452 36 100.0 30 .................................... TCCGCTACTCATTGATGCAGTTAAGTGGAT 4386 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 4320 36 100.0 30 .................................... AAGAGAAGCAAGAGGTTTTAAAACAACTTG 4254 36 100.0 30 .................................... ATCTAGCGCATACAGGCCTTCTTTACAACG 4188 36 100.0 30 .................................... ATGTGAATTGCGCTGTTTTCAACGACGTGT 4122 36 100.0 30 .................................... TACCTCCTTCTTGAACTCACCTCATATTAT 4056 36 100.0 30 .................................... AAGAGCAAACAATTTACATGCTTGCTCTTC 3990 36 100.0 30 .................................... GAATTGCTAGTCTATGATCACAACAAATAT 3924 36 100.0 30 .................................... AAGTTAACTCTAATTCACAATTATACAAGC 3858 36 100.0 30 .................................... CATACAGCTCTTATTTCATTCATATGGACG 3792 36 100.0 30 .................................... GCAATACCGAGAAGAGCTGCAGATGGGCGG 3726 36 97.2 0 ..............................T..... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAATACTATTTATTGAGCCTAGACAGATAAAAGGATCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CTGTTTTAACTGATTATATTCTAAATACGAGTAGGGAATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGAATTTAACTATCGAAAATTTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAAAAACCTCCATTATTTTTATTTTTTGTGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGGCACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAAAAATATCAAAATAAAAACTGATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //