Array 1 17182-13794 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMUR01000054.1 Acinetobacter baumannii strain Pesh-22 Pa2_S2_L001_R1_001_trimmed_contig_54_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17181 28 100.0 32 ............................ TAAAAATTCAAATGCGCATTTAGCCACGATTG 17121 28 100.0 32 ............................ GTTACAATGTGGACGCGGGGTGGTGGACAGAC 17061 28 100.0 32 ............................ TCTGCGAACAAAGAGTTAATTCAATCTAAGAT 17001 28 100.0 32 ............................ TTTCTTGGGTTGTTCTTAAGTTTGCAGGCAAA 16941 28 100.0 32 ............................ TTTCTGAATGTTTCAAAAGGTAAACAAAAATG 16881 28 100.0 32 ............................ TTGATTTTTTCCAGTTCTAAACGAGCTTTATA 16821 28 100.0 32 ............................ GATTACCGTTGCAAGGTTCAAGCGAAGCCGAC 16761 28 100.0 32 ............................ ATTTAGTGATGTGGTGAAAAACTGGTTCGGGA 16701 28 100.0 32 ............................ TGAAATGATTCTTTGCTCTTTAAACCATTACG 16641 28 100.0 32 ............................ ACGCCATACCAACCTTAAATGTAATGCTCCGT 16581 28 100.0 32 ............................ TTCAATGCTGTCAACCTTCTGCTCTAGCAGGT 16521 28 100.0 32 ............................ TTTCAGATGATGTACAGAAGCATGATGAGTAT 16461 28 100.0 32 ............................ TAATCGAACCGGTGTTCACACGCTGGCTTGAA 16401 28 100.0 32 ............................ TAGCGGCTCCCATGCAACGCTTGCGGCTTCAA 16341 28 100.0 32 ............................ AAAACACATGCAGATCTGTCTCAGGATTATCA 16281 28 100.0 32 ............................ TTTCCCGCATAGCCAGACATTAGAGTCGCCAT 16221 28 100.0 32 ............................ AGAACGCCGCGTCGTGCTTCATCAAGCTTAGT 16161 28 100.0 32 ............................ AGACAATGATAGACGGCTTTTTGCCTTGTTCG 16101 28 100.0 32 ............................ TGTAAGCGTTTGTTTGCGCTTAACAGAAGGGT 16041 28 100.0 32 ............................ TCATTAACCTCCCAAGTCATTTGAAACTTGTG 15981 28 100.0 32 ............................ TGAAATACCATTAATAAACAAACAACAATCTA 15921 28 100.0 32 ............................ TTCATGATGCGTTGAGCCAATTCCTCGCTTGT 15861 28 100.0 32 ............................ TGAAGTTAGCATCACAGGAAAATTAACAGTAT 15801 28 100.0 32 ............................ GTTCTGTGCTCACTCAAATCATATTCGCATTT 15741 28 100.0 32 ............................ CTGTTGTGTTTGAGGGTTTGTCTGGTGCGCCT 15681 28 100.0 32 ............................ GTAAGGATGTTGCAACCACTCCGATTGTCGTC 15621 28 100.0 32 ............................ AACACGAGTTTGAGCTAACGTAACATCAGAAA 15561 28 100.0 32 ............................ AGTTGCAGGAGGTGTACTCGGATTTACAAGAT 15501 28 100.0 32 ............................ ACGTTCAACGATAGCAACGTGATTACCATGAA 15441 28 100.0 32 ............................ TGAAAAGCACCGCCTCACAAGCGGAACGCTGC 15381 28 100.0 32 ............................ GAGTTCGGTAAGATCTGCGCGAAGTTCCCTGA 15321 28 100.0 32 ............................ ACGCTATGCCAATAAGTTTATCGTGAGGTATA 15261 28 100.0 32 ............................ TTACTCACCAACTCTTGCGCTACTTGGGTAGA 15201 28 100.0 32 ............................ ATCAAGCTTGAACTTGAGCTGCCGAAGCCTTT 15141 28 100.0 32 ............................ AAATCAACACTCCTTTGACTGGCCTTGATACG 15081 28 100.0 32 ............................ TTTAGCACAAGTCCCGAACCAATTTTTCACCA 15021 28 100.0 32 ............................ ATATTGAGCAGTTCTGATTTGACCAGCTCCAA 14961 28 100.0 32 ............................ ATCCATCCATGTTAATTCATCATTTCCATAAA 14901 28 100.0 32 ............................ TTCAGCATAACCCTAGACATTCCAAACTTCTC 14841 28 100.0 32 ............................ ACTCCAAGAGTTATCAACACAGATTTTCAAAA 14781 28 100.0 32 ............................ ATCCATATTGATTGTCGCAAAAGTGATATTTC 14721 28 100.0 32 ............................ ATTAGGTAGTACAATTTCTTCACGTACAGTTG 14661 28 100.0 32 ............................ TTGTGGAATATTTGCCTCAAGTGTAGCAACAA 14601 28 100.0 32 ............................ AATCAAAATCATTAGCTTGCTGTTTAACTTCT 14541 28 100.0 32 ............................ ATAAATATGACGCCTACATGAGTTTTTAGCCA 14481 28 100.0 32 ............................ ATTCATGCAAGGTGTTAATGCTGCAACACGAG 14421 28 100.0 32 ............................ TAAAGCTTTTGAATGTTGAAAAACATGTTAAG 14361 28 100.0 32 ............................ CTATTTATGATGGCGAGGATAAAGCGGTTATT 14301 28 100.0 32 ............................ CTGTGGGTTGATGGTCAAAATATGGACGTTGG 14241 28 100.0 32 ............................ AAGATTATTGATGTTAAAGCAACTAGCGTTGG 14181 28 100.0 32 ............................ CAAATTGAAGCGATTACAGATAGAGATAATTT 14121 28 100.0 32 ............................ TTAAAATGCTGAAATCTTGATGATTGAATTTG 14061 28 100.0 32 ............................ CCTAAACATTCCTTGTATGTTGTGCACAATGA 14001 28 100.0 32 ............................ ATAGCAATTTCAGACCGCATAGGCTTAACTAC 13941 28 100.0 32 ............................ ATTGTAAGGTCGATAGGAATGTCCATTCCACC 13881 28 100.0 32 ............................ ATCCCAGCATCACCATGCTTGGCATAAGTTGG 13821 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 57 28 99.9 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : ACTTTAAAAATAGAAGCCGTTTTACGTACATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATCCCGCCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTTCCCGTTTTGTTATCTAGCCAATTTTTAACATATTATTTGAAAAATGAAAGTATTGAAGGAGAGAGTTGCAACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGAAGATTAGGTTATATTTTTTAAAAATGGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGTTTCTTCCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTCGTATTAAACTGATTAAAGCTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGACATTCAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACAAGAGCAATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGAAGGCTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACTCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGAAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCACACGATGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTACTCATGCTTGATGAATGGGTCAAAGTAAGTAGCTTATTGGCAGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 22271-27939 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMUR01000054.1 Acinetobacter baumannii strain Pesh-22 Pa2_S2_L001_R1_001_trimmed_contig_54_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 22271 29 96.6 31 ............................C CCGGCTCGAAAGTGTTATGCTCCCGGCGATA 22331 29 96.6 31 ............................T AAATCATATAACCCTGCCACATCAAACTCAA 22391 29 96.6 31 ............................T GCCGAGATAGCCCGCATGTACCAAGAAGCGC 22451 29 100.0 31 ............................. AAAGCTAAAGATTTGACAAGTAAATTCAATG 22511 29 96.6 31 ............................T CGGCCCGCGGCAATGTCCGCGATAAAAATCG 22571 29 96.6 31 ............................T TACGTCTAGCTTTCTCGTGCTTTGAGGTCCA 22631 29 100.0 31 ............................. TCAATGCTAGACAAACGCGGCGGTAATTCTG 22691 29 96.6 31 ............................G TCATCAGTTAGTGGATGGAAAGCTATCCCCC 22751 29 100.0 31 ............................. TGATGATTTTGGCATCCAAGATGACTTTAAT 22811 29 100.0 31 ............................. AAAAGACCAAACAATATTCTTGTTCTTTCTA 22871 29 100.0 31 ............................. ACCAATTGTGTCACCTGAAGCGACTGTTTGA 22931 29 96.6 31 ............................T TTTCGCCAATCGTGTAATACGCATAGAATCT 22991 29 100.0 31 ............................. ACGACTGAAGCTGCTGTACCAACTGCTAAAA 23051 29 100.0 31 ............................. GGATATGAAATACCTGGTCTAACTGAGCTGT 23111 29 100.0 31 ............................. CTATTAGTCCATGCAGAAACAGTAGCTCTAC 23171 29 96.6 31 ............................T TCAAAGTACACAGCGTAAATTTCACCATCAA 23231 29 96.6 31 ............................T TACGGGTTAAATCGGTGTAGATGTAATTACC 23291 29 96.6 31 ............................T CAATGCGCTTCATCACCGATGGATTGCTAAG 23351 29 100.0 31 ............................. ACACGGGCACAGAATGTATCTGTGTAGATGC 23411 29 100.0 31 ............................. TTTGGTCAGGGATGCATTAGGCGCTATTGAC 23471 29 96.6 31 ............................T TCATCACCTTGCAAGATTGCAGACATATCAG 23531 29 96.6 31 ............................T TGGGGTGAGAATGTCATTCAGCTTAAAACGA 23591 29 100.0 31 ............................. TGACCAAAGTTTTAGAAATGGATGAACTTAC 23651 29 100.0 31 ............................. CCCTAAATCAAATTCGTATTCATTACGCACA 23711 29 100.0 31 ............................. GCAATCAAAAAAACACTAAAAGTGATGGTTC 23771 29 96.6 31 ............................G ACCGCTAAATCTGATGTGCTTTGCAAACTGC 23831 29 100.0 31 ............................. AACTCCAGTAAACATTCTGAACGTTCACATA 23891 29 96.6 31 ............................T CAAGACGCAGCCACTCTTGATGCTCTTGCAA 23951 29 96.6 31 ............................T CAAGCTGTTCTCTCCTCCTCCGCCTCCTCGT 24011 29 96.6 31 ............................C GCTACAGCGCAAATCTGAAGCATTCAAGACA 24071 29 100.0 31 ............................. CAAACTGGCTACAAGCAATTTTAACCCCTCT 24131 29 96.6 31 ............................T CATTAAAGACCTTAGTTTGTGGGTTTACGCC 24191 29 100.0 31 ............................. ATTCGGATCTGATTAACTGGACTGTCGGTCT 24251 29 96.6 31 ............................G TTTGTTGTTGAGTCGCCATTGGTGATGAGAT 24311 29 96.6 31 ............................T TCAATTTTGGCTATGAAAAATATGATGCGAT 24371 29 100.0 31 ............................. ATGAGAATGGAGAGCCAGCAACAACTTATTA 24431 29 96.6 31 ............................C ATTTCTGAATGAGAAGAAGTGGGCTTTTTTA 24491 29 96.6 31 ............................T ACAAAAAAACAGCTAGCTGCGGGCCCTCGCT 24551 29 100.0 31 ............................. TTTCATACGGTCTATTTGGATTGTACTTGAC 24611 29 96.6 31 ............................G ATCCCATTAGCACGTGTAGTTTGATTCTCGG 24671 29 96.6 31 ............................T TTACTTTGCACATCAGCATAAGAGTTTGTGC 24731 29 96.6 31 ............................T ATCACTAAAACAGCAACCTTCGATACTGAGT 24791 29 96.6 31 ............................T CATAAAAGAAACGGCCATTTTCTGAATAAGT 24851 29 96.6 31 ............................T TCGGGGCTTTTGCTTATATTTGTTGGTACAC 24911 29 96.6 31 ............................T AACTTCAATTTGCCATCCACCAGTTGAAAAC 24971 29 96.6 31 ............................T TAATTTTGTGAATTAGTAACTGCTTGAGGTT 25031 29 96.6 31 ............................T ACTTGCCGAACAAAATGCTCCACGCCCTGCA 25091 29 100.0 31 ............................. TATTGTTTTGTACTCACAAATCAATATGGGT 25151 29 96.6 31 ............................T TGTAATGGGTCTATAGTCCTTTACTGTATCA 25211 29 96.6 31 ............................T TTTGCAATCGTATCAACGGCCCAAGGCGTAA 25271 29 100.0 31 ............................. GCAACTACCCTGTTTACGCTGAAATGAGTAA 25331 29 100.0 31 ............................. ACAGGACAAGTCCCAATCGTGAAATCTTGTC 25391 29 96.6 31 ............................T TAATCGGCTGTAGATTTTTATTGATCAGAAT 25451 29 100.0 31 ............................. ATCAAGCATACGGGTAAGCACTGGGTAAGCC 25511 29 96.6 31 ............................T TCTGCATAGCGTTGCAGCAAATCCATGTCCT 25571 29 100.0 31 ............................. ACACTGGTATAAGGATGGGGGGCGCTTAATA 25631 29 96.6 31 ............................T TGAGCTGCTAACACTTTGGATACCGCATTTT 25691 29 100.0 31 ............................. AGACCAGTTTTGAAGGATATTAACTTTTTAT 25751 29 100.0 31 ............................. TCAGGCTTTTTTATTTCCGATTGCTGTGAAA 25811 29 96.6 31 ............................T AAGTCTGGCCATACATACGACCTTTTAACAG 25871 29 96.6 31 ............................C AACTGAAAAACATCCAAAATATTCAGCATTA 25931 29 100.0 31 ............................. TATTCTGATGAGGCAATCTAAATATATAAGT 25991 29 96.6 31 ............................G TTCTGAGAAAGACGGTAAAGAACGCGCATTT 26051 29 96.6 31 ............................T AAAACCCTACCAAGTACTTACGGTGTCTTAA 26111 29 100.0 31 ............................. CCATCACGTTGTAGGTTCCGAAGAAATTATC 26171 29 100.0 31 ............................. AAACTATCGCGAATTAACGCTTGAACAGTTC 26231 29 100.0 31 ............................. TAAACCAGATCATCACGCGCCTTTTCACGCT 26291 29 100.0 31 ............................. CTAAATACAGGCTTTGACGTAATCTCATAAC 26351 29 96.6 31 ............................T GAACATAGTTATTAGCCTGATAGGACTGATT 26411 29 96.6 31 ............................C TGAAGACACTTTTCTATACCGCTACGTTACA 26471 29 96.6 31 ............................T TGCAATAACTTTGCAGGCGAAGCCTTAATCT 26531 29 100.0 31 ............................. TTCTGTGGAAGGAATGGCGGTAGGTTTGCAA 26591 29 100.0 31 ............................. CCAGAGATTGCAAGAGCAGCCATGCTGACAA 26651 29 86.2 31 ....G.......CC..............G CTACCAGTCTTTGCACCAAGATAATTTTTAA 26711 29 93.1 31 ....G........C............... AGCGGTCTTGATAGTTCAATGGTTTCTCTCC 26771 29 89.7 31 ....G.......CC............... CAGTACCGTTCTAACTCGTCAGTGCTTGTTG 26831 29 82.8 31 ...AC.......CC..............G GAGTAGTCCAGTTTTCTTTCTGAGCTCTACG 26891 29 93.1 31 ...GC........................ CAACTTTTTAAATTTGAATTTATTTTAGCTC 26951 29 93.1 31 ....G...............C........ TTTGTTGCACAGTAATGGTGTACTACGGGAT 27011 29 82.8 31 ...T..A...T.TC............... ATGTGCTTTACGGGGATGAGGTATTCTTCCA 27071 29 86.2 31 ...GC.......G...............T CACTCGTTGAGCCATAACGCCCCGACTCAAT 27131 29 86.2 31 ...GC.......G...............C GTCAGATTCCAGTAGGTCTAAAGACAGATTC 27191 29 89.7 31 ...GC.......................G CACATAAGGATCAAATTTATCACTTCCTTGT 27251 29 89.7 31 ...GC.......................T TATGTGGGGTTTGGGGCGAAGCTCCATATCT 27311 29 79.3 31 ...GC......TG...........A...T CAAGTTTTTTGATACTTGGGAAATGTGTTTC 27371 29 93.1 31 ...GC........................ GCTATCCAAAGCGTTCAATGATCATCTTCGG 27431 29 86.2 31 ...GC.......G...............T ACAGATGCAGACCGACTAGGGTTCAGGAAGG 27491 29 82.8 31 ...GC.......CC........C...... TATCGAGAGCTTTGTCGATGTAGACCTGCAC 27551 29 93.1 31 ...GC........................ TTTTTATTCCAAGGGCTTTTGCTTCTTGTGA 27611 29 93.1 31 ...GC........................ CCATTGGACTTGATCCGCTCCTGTGCCGAAT 27671 29 86.2 31 ...GC.......G...............T TGCATGTGCAACGGCGCGTACGCTGCTAAAA 27731 29 86.2 31 ...GC.......CC............... CATGGGAGCTTCCATTTAGATGCGTTATCAA 27791 29 82.8 31 T..A........TC..............T GTTTTGCGCGTAGTGCGATTTGTTTTGCATT 27851 29 86.2 31 ...GC........C..............T CGCCCCATTCCATCCAAACGCGATTTAAGTA 27911 29 86.2 0 ....G...................AT..T | ========== ====== ====== ====== ============================= =============================== ================== 95 29 95.7 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCTTACCTATTTTACACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTCGCTGATCTAGTTAAAGATGCTTTTGTAATGCCAATTGCTTTTACATGTGCAGCAAAAGGATTAAATCAGAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAATCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTAAATTTTAAAAAGAAAAAACCCCAAAACTTACGTTTCAGGGCTTTTCACGAATTGATGGCGTCAATTGAACTGATAAAACAAATAATTGTTTTTTAAAGTTAATTTCAATTCAAAAAATAACAGTGTACACAATAGTGTACAAATTATTTGTTACTAGGGCATTTCTCTGAGTTTAGTTGTCATGCTGGGTGACGAACTCAGGAGTTAAAAACACTCCTTTTAGTGGATCGGATTATGAGGCTCGTTATTTGGCTTCAATAAATTTATTGAGCGCAAAACCATATTTGGTGATTGGATTTTAAATCTTGAATTAACTTAGCCGTTCAAGTGGCTGATTAAGTAGCTTGGTCGCGTTTTAAGTGTGAGCAAGTTATAAAAATCACGAAATACTTTCGATTGCAGATACGTGCATCCAGTCGCGTGTACATTGCCGAAGTTGAGGATTTAGATGGTGGGGGGTATCCCTATGTTCAGGTTATTTGCAGAAGTAAACCGC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-53] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //