Array 1 144005-144765 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQWI01000002.1 Pectobacterium carotovorum strain DSM 30168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 144005 29 100.0 32 ............................. CACCACGACATGGCGTATCGCGCGGATGGTGC 144066 29 100.0 32 ............................. GGAGCCACCGACAGACAGGTTGTCCGGCAGAC 144127 29 100.0 32 ............................. CCGCTCCAGTTCTGGCCAGCATTCAACATCGC 144188 29 100.0 32 ............................. AACTAGCGGGAATCATCAAACTACAAGCAAAA 144249 29 100.0 32 ............................. TAGCCGCTACCGGCGTATGAACAGGTAGATGA 144310 29 100.0 32 ............................. GCGTATGAGGGACAGATTTCGACCACTGATGT 144371 29 100.0 32 ............................. CGCTCTCTGTTCCGGCTGTGGTTATTTCTGAT 144432 29 100.0 32 ............................. TCCATCCACTTTTCGTTAATCAGCGGCTGTTC 144493 29 100.0 32 ............................. CCACTGGTAACGATTCCGTTATCGCATCATCA 144554 29 100.0 32 ............................. GAATGGGTTACGCCTTTGCAAGTTCGCCGTTC 144615 29 100.0 32 ............................. GTGGTTCTAATAAATTACAGGGACTTGTAGGA 144676 29 100.0 32 ............................. AGGAAATTGATGGAAACACTATTTGCGCTGGT 144737 29 89.7 0 ..A..........T..............C | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGATGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCAGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCATCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAACATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 147529-148107 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQWI01000002.1 Pectobacterium carotovorum strain DSM 30168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 147529 29 100.0 32 ............................. CATATGAATCCCTACGAGATATAGCGTAATCC 147590 29 100.0 32 ............................. GCACCGGCATCACCAGTCTGCCGGACAACCTG 147651 29 96.6 33 ............................A GGGACATAAGCGTACCTGCGCTCAAACACTTAG 147713 29 100.0 32 ............................. GCAGTAGCGATACATTCAGGTAAATCAAGCAA 147774 29 100.0 32 ............................. GACAAAGTAGCCAAAACCGTGCCAGTGAATAC 147835 29 100.0 32 ............................. AAGAAGTAAAAGATAAAACCCCTATCTCTAGC 147896 29 86.2 32 .......TT....A..T............ TTCGCTGCGTTCATTATGGACCAAGACACACC 147957 29 100.0 32 ............................. AAGTTCAGAATGGACGTCTCTGGGTGGCTGAT 148018 29 96.6 32 .............T............... GGGAGAACATTGCCACCGGGTATTCCGCCGGA 148079 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTCCTGCTAATTATTTACTGCGTTACTTCAAGACGATGGATATGCATTGATTACTTCCAATTTATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATTTTTACCGAGAAATAGAAATAAAAGCGCAGTGGTATAGCTCTTGCAGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCGGATGTATGAAATCAAACTGGCAGAACAGGGAAACGTGGTGATAGCGTGGGCGAAAAACACGGAATCTGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGGAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTTCATGTTGGTCTAAATATCCCCTGCACGGTTCAAATCCAGCCTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTGCACTCACCGTAATGGTGACGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGAAACGGTTGAAGGCCTTGTTAGCAGTGGGCGGTTGGGACGTGAAGAAGGGTCTGCGCTGCTGGGTTTTGTCTCGTCACCGAGAGCCGAAGGGGGAAGTATTCCACCTTCCAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 164239-164447 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQWI01000004.1 Pectobacterium carotovorum strain DSM 30168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 164239 28 92.9 32 A..T........................ TGGCGTCACGTCAGCACATGCCGAAACCTCAC 164299 28 100.0 33 ............................ ATGATGTTGAACGCATAGCCCGGCCGGATCTCA 164360 28 92.9 32 ...........CA............... TGAGAGATCAGCACTCCGTCGTCATCGTTGCA 164420 28 85.7 0 ............AC......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.9 33 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AACCGACGGACGTCGGCGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGATCTCATCTACTGGTCTTGCGCAGCATCGGGTTTCTGCTTTCTGGCGCTCTTTCGGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGCATTCAATATTGGCAGGATTATGAAAACGACAATGTGATACTCTCCCCGATGCCCGGTGAGCTGTATGTTTCCATGCTGGTAGGCGCAGGCATGGCCGCCATCGGCATCGTGAAATATCGACATGCCCGGCACAACCCAGTCGCTCAACGCCCAACCTATGCGAAAGCCGTCGCGGCATTGCTGCTAGTTGCGCTTTATTTTGCGCTCCCGCTGCATCTCTACCTGCGTGAACCTCTCCCCTACTGCGCCTTTAGCCCTGACGGCCAGCAGTTAAGTATCTGTCTGGGAGAGAATGACGAGCGGATTATTGTGGAGTGATGG # Right flank : AATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCCGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGCCTAGGGTTAATTGAGGTGCGACTTATCAACCACACCAGCGAATACGTTGAACGCTTTCATCAAATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAAAGCG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 171851-172720 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQWI01000004.1 Pectobacterium carotovorum strain DSM 30168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================= ================== 171851 28 92.9 32 T............C.............. GCAATATTGTTGACGTAACGCATAATCAGCGT TA,G [171854,171857] 171914 28 96.4 32 .............C.............. GCCATCGAACGCGTTATCACAAGCCTCGCCGC 171974 28 100.0 32 ............................ TGATAACCCTGAGTGAATTACTCGAGTCAAAC 172034 28 85.7 32 ..G........T.....TC......... ACACCAGTTTTTAGGTTGAGTTAATCCCTCGA 172094 28 96.4 32 .............C.............. TGGTAAAAGCGATGAATGCATTCAACATCACC 172154 28 96.4 32 ...........G................ GTATGAAGCGACGTTCAAAGACATGCCTCATT 172214 28 75.0 89 ..C.................TGA.C.TC CAGATGCTGCTATCGATTAACGGTTATCATTTCTAAGCTGCCTGTGCGACAGTGAACCACTGCATGATTGGTTTTTGCATAACGTTCGT 172331 28 96.4 32 T........................... CATGCTGCCGATCGCAACGCGTGGCCACTCAT TA,G [172334,172337] 172394 28 100.0 32 ............................ CCCGTCGCGCAAGTTACGCAGAAATTGAAGTG 172454 28 100.0 32 ............................ ACAAGAAAAAGGCGCTGGGCCGCGCCTATTGG 172514 28 100.0 32 ............................ GGTTACGCTATCCGGCGTAGCTTCACTGCTCC 172574 28 89.3 32 .......A.T.T................ TGTCACGACGAAATAGACCGCAGAACGCGACA 172634 28 92.9 32 .C.........T................ TATTCCTGTTTGTTTATAGTGATTACACTCTT 172694 27 75.0 0 ...A...A...TGC.......-....T. | ========== ====== ====== ====== ============================ ========================================================================================= ================== 14 28 92.6 36 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AACGCCTTTAAAAAATACGTCGCTTCCTGCACAGTCAATATGGCATGAATGTTATCGTTATTTATTTCATTTAGTTGAGCATGTAATTTCTGATAGTTAATATCTGCATGCTGCTTTTTAAAATCAAGATGGTCCTCTAACCGATAGTCATCATCTACAAGCGTTTTTAAAACGGGATCGTATTTCACAGTCACTCACTCCCTTGAATTTGACTTAAATCAACGCACTATTTCCCTGTAAGGGCACTTTAACGGAAAAATGATGATTTTTAAATGTTAATAATGCCCAACCCGTAATTTTTCATTCCCTCGAAAAGAAACTCATTACTTAAAAACGTTACGAAAGAAGGCCATCAATATGCGTTATTTAACGGGGTAAACGCATTGAGCACTTGGCGCAGCGCTACTTCGATAATAGCCAGACAATAGCGCTTGAGGCCGTGGATAAACTGCCTATGCGGCAGTGAACCTGCTGGACGAAACATTCTCGATATCAGAGCC # Right flank : ACTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCATTGGTGATGGGGATCGTCAGGCTGTTTCCGAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCAGCATTTTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACTTTTATCTGGCGCAGTGCGATAACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGAGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-0.36, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //