Array 1 40949-41098 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUAE01000035.1 Bacillus pseudomycoides strain AFS028766 AFS028766_96_A1_Contig35_140514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 40949 30 100.0 30 .............................. TAGCCAACCTGTTTTCATCGCTCCGTTGCT 41009 30 96.7 30 ......A....................... CAACCAGCCCGTTTGCATTGCTCCACTATT 41069 30 93.3 0 .........A.....G.............. | ========== ====== ====== ====== ============================== ============================== ================== 3 30 96.7 30 TTGCAGGTAGTACCAAGTTGTTCCTTCCTG # Left flank : TTTAACACACGAAGTTCTGGTCGATCTTTTACAAATCTATTTTTAGCACCTGTATTTTTAATTAAAGCATTCTGTACAGCATTTGCTAAAGTAAGTGCTTGTTTACTTTTTGGGTGTTCAGAATTATATAACGTTTCAATTCCTTCTGCTGCAGTCGCATCAGCTGAATTTACATGCACACTAACAAAAATATCTGCTTTGTTTTCATTTGAAATACGAACACGATCTCCTAATGGAATAAAGATATCTGTTGCTCGTGTCATCACAACATTTGAACCACTCTGAGCTAATAAACTCTTTAACTTCAAACCTACTTGCAGGGCAATCGTTTTTTCATATATATTTTCATATAATGTCCCTGAATCATATCCACCATGTCCTGGATCAACTATAATTGTTTTACCAAATATGATTGGATTGTCAATCCAAACACCATTTGTATCAAAATAGTATACTTTACCATTCTCATCTAACCATCCGATTTTCATTGCCCCATTGCC # Right flank : GCAACCAGCCCGTTTGCATTGCTCCGCTTCCNNNNNNNNNNNNNNNNNAATTGACTGCCAACCTGTTTTCGCTGCTCCGCTGCTTTCTAAATAATATTTTTTATCCCCAAGCTGCAGCCAACCTGTTTTCATTACTCCATCGCTTTCGAAGTAATATTTTTTATCACCAAGCTGCAACCAGCCTATTTTCATTGCTCCATTGCTTTCTAAATAATATTTTTTATCTCCAAGCTGTAGCCAGCCTATTTTCATTGCTCCATTGCTTTCTAAATAATACCAAGTAGTTCCTTCCTGCAACCAGCCCGTTTTCATTGCTCCACTACTTTGCAGGTAATACCAGGTTGTCCCTTCCTGTAACCAGCCCGTTTTCATTGCTCCATTGCTTTGCAAGTAATACCAGGTTGTCCCTTCTTTCAACCAGCCTGTTTTCATTGCCCCATCTTGTTGCAAATAGTACCAAGTAGTTCCTTCTTGCAGCCAACCCGTTTTCTGTTTTCCAT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAGGTAGTACCAAGTTGTTCCTTCCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 9542-10630 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUAE01000006.1 Bacillus pseudomycoides strain AFS028766 AFS028766_96_A1_Contig15_140514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9542 32 100.0 35 ................................ CCACCTCTTCCCTTATTAATTCACGTTTTACATAT 9609 32 100.0 33 ................................ TGGGAAAGGCTGATTTTATATCATACGAATAAA 9674 32 100.0 36 ................................ TTAGAGTATAAACAAGAGAAATTGTTAACTGATTTT 9742 32 100.0 34 ................................ TCAGCCATTTTTGTCACTCCTTTATAGTTTTACT 9808 32 100.0 34 ................................ ATCTCTAACCGAACGAACCTGATAATAAATTTGG 9874 32 100.0 34 ................................ AAAAACAAATCCGAACATGAAACGTTAAAAAACA 9940 32 100.0 33 ................................ TTCTCTTGCTCATTTGCTCTTTTGGACCTTTAT 10005 32 100.0 34 ................................ TGATATCGATTCATCTAAATCAGTATCAAAATTT 10071 32 100.0 35 ................................ CATCATTTAAATCGCTTCCTTTCCAAGAAACTTGT 10138 32 100.0 34 ................................ CCTGTTGTGGACGCTGTATTCTCTACGAAACAAG 10204 32 100.0 33 ................................ AAAATACATTAAATATCAAATAAAAAATCTCTA 10269 32 100.0 34 ................................ ATATAGATGTGGGCGACGGAACTACAGAATATGT 10335 32 100.0 34 ................................ CTTTTACTACGGTTGTGATGGATACAGTTAGCAT 10401 32 100.0 34 ................................ ATAAATAGTTGTTTGGTAGTTCTTTAGATTCTCT 10467 32 100.0 34 ................................ TCTGATTGAAGCGTCATAGAACACTCTAGGTGCG 10533 32 100.0 34 ................................ ATTAAGACAAGCGGATTTAGCTCATGATCTAAAT 10599 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 100.0 34 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : TAGATGAGTATCCACCATTTTTATGGAAGTAGGTGTAACATTTGCTAGTATTAATTACGTATGATGTAAGCACTATTAGCGGTGCAGGACAAAAAAGACTGCGAAAAGTTTCAAAAGTATGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTAGATGCAACTCAATTTGCTACTTTAAAGATGGAACTAGTTAAAATTATTGATGAAAGTGAGGATAGTCTCAGATTTTATCAGTTAGGTAACAACTATAAAAGTAAGGTCGAACATATCGGTGTAAAAGAATCAATTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAACGTATAGCATACATAAAATCTCTAGTACATTCGCACCTAAATTTTCATAATTTATGATTAAAATTTATGATTTTCTATACAAATTTCTTTATCAAATAAAAAACTTGCATACTTTTGAACAGAATTAACGTATTTGTGTATTATTTTGAACACAAATCGCA # Right flank : TCCAAATGAGACAAAAACAAATTAGCAAAAAATCAGGTCGCACCTCTTTTTTCTATCCAAATAGACTTCACCAATTTCTTAATAAAACAAGGTCTCGTTCTACAATATTACTTAACTACTTTGGCTTCCCAATTGAGACGCCTACTGCTTGCTATAAAAAATTTCATATTTCGACTCCTATTCTTCTCTTTTTCACCTTTCAAATTTTCCAGACTCCATTCAAATGAAACTAAAAAAGCTGAATCCCTTCGGGCAGAAGAGGTTTCAACTTTTTATTTTTTAGTCATAACCTTTGCAACAAGTTGCCATTAGGATAGTGTATCAGCAACTTGTAGCTATTACTATGAATGCTACATTCCACAAAATTATTACATGTTTTTTCATTTTTACTTCTTAATTTATTTTATGATAAAAACTACACCAAAATTACAATTTGTTGAAGGTTTTAAAAATTATAGATTTGGACAAGCTAGATTTATAAATAATGATTTTCCGAGGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //