Array 1 26461-27711 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019663.1 Corynebacterium ulcerans strain FH2016-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26461 29 100.0 32 ............................. GGTTGCCGTCTGGAGTTCAGTATTTTGAGCTC 26522 29 100.0 32 ............................. TGAAAGAAAACGCAGCTGAGGGATTTTCCAAG 26583 29 100.0 32 ............................. ATGCCACCAGTTCCAATTCGTGAGCGCAGGAT 26644 29 100.0 32 ............................. TCACTGCGCATCACTCCCTCACCAAATAAATC 26705 29 100.0 32 ............................. TTTTCAAAGCCTCAGGAAACGCCAAAAGCAGC 26766 29 100.0 32 ............................. ACCTTCACGTATAGGGTTTGACGCATTTGCCC 26827 29 100.0 32 ............................. CGCCTGCTAGGTGAAGATGTGATCCTCGCATG 26888 29 100.0 32 ............................. CGTGTGGTGGATTCCAGCCATCGCTCGCAAAT 26949 29 100.0 32 ............................. GGTTCCGAAGTGCTCGATAGCTAGGGCGCGCA 27010 29 100.0 33 ............................. TATTTTTAGAGAAGGGGCAGTAAAATAAAGAAT 27072 29 100.0 32 ............................. TGCCTCTAACGAGGTGGGGGTCAATTGTATGC 27133 29 100.0 32 ............................. CTGGTGAGGGTTTCTTTTTTCCTCTTGCTTAT 27194 29 100.0 32 ............................. GAACCGGGGCCAAGTCCACTACCCGGTGGTGG 27255 29 100.0 32 ............................. CGCCCCGAAGGTTGAGTATCACGATCGGTTTA 27316 29 96.6 32 T............................ GAAACTGCGTCTTTTAAGGAGCATTGGCATCA 27377 29 100.0 32 ............................. TGTGGGCCTGGTGCGCCCCAAGTCAGAATCTG 27438 29 100.0 32 ............................. ATTTCGCTTCAAAAGACTCAGGATTTAACCGC 27499 29 100.0 32 ............................. AATTGGGTTAGCCATTCGGTGAAGTTCATGCC 27560 29 100.0 33 ............................. CTTGGGGACGCTCAGGCAACGGCGGCCAAGCTG 27622 29 100.0 32 ............................. AGCCCGCCACCAAGAAGAAAATTCAGCAGCGG 27683 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 GGAACTACCTCCGCGTACGCGGAGAAAAG # Left flank : GCTGCAGCGCGAATAACTTTTTCTGCTAAGACTTCATCACGGATACCATACAAATTTTCGAGACTTGCATCCCCAGGATAAGGCAGCTCATCCCAGCGACGTTTTCCAAATCACGATTAATCGAGGTCATGATTTATTGATGGGTAAGGTGGGTGGACTCCTGCAGCTTTCAAAAGCGATTCAAAAGATTCTTGTTCGCTAATTTCACCAAGATAATAAGCGGCAAGGATTTTTTCATCTTCTGGAGTTCTTGGTTGCCCTTCGATTTCTGCGCTTGCTAGATCATTGCGAATCTGTCGTAATTGGTCTTCGCTAATGCGTTCAGTGGGATTCATCATGTCCATCAGTGCTCGTTTCTGGTTGTTCAAATCCGTTTTTGTCAGAGTTCTTGGAAGCCGCCAATATAGCAGGAACTCCTTTGGTGCTTAAGGAAAAAGAAGATGTGAGGAAGGACTGAGACTTTCCCAAATCAAGGATCTTTTGCATGGTAGCCCCAGCAC # Right flank : GACTAAATAACCTGCGCGTTTACTCACTCTCTGGGCAAAAATCCTCCAAAACTTCGTCTGGAATAATTGCATCGGCTTCATCCAGGGGGTCAGCAAAACGCACGTCTTCTATTAGACCACGAGCAGAGAGGAAAAGGCCATCAATATCAACGACGGGGCGCCGTTGTTTTCCTGTTGTGCGGATTCTGAACCCTTGCTCAGCATCATATTGCGGGTGAATCAGAGTAAGGGATCCTGCTAGGTCTATGGATTGGCATTTTTCCCAAAGGTTTTCCATGACGGCTCTGGATAGAACTCCTACATAAAGACCTGCGTCTACTTCGGAAAGGAAGCGACTGAGGTAGCCGTTGAGGTGGTTCGGAAGGTTATGTCCTTGGATGACCGCAAACATTTATTTACCACCATATTGTGTGTGCCCTGGGACTTCGTGGTTTCTTCCGCCGATGAGGCGGTCGTCGGTACGCTCGGGAAGATGTGGAGTGAGGATCTCCATCATAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCGTACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 106707-106085 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019663.1 Corynebacterium ulcerans strain FH2016-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 106706 36 100.0 37 .................................... GGTGTTGAGCTTGCGCGACTACGCAATATTAGCGAGG 106633 36 100.0 35 .................................... GGGGGTATCCCCACCGACCCACGACCCCTTACCGA 106562 36 100.0 37 .................................... ACGGCCGTAAGTGACCAGTCGATGCGGTCATCAGCGA 106489 36 100.0 36 .................................... TTTCTCGGCAACTTTTGCCAGCTGTTTTAACGCTTC 106417 36 100.0 39 .................................... ATGGGAACGAACCTTAGGCGACTACGAGCATAGGGTGGA 106342 36 100.0 39 .................................... AGAAAGCCCTTAGCGCGATGCGGTCACAAGGATCATTAG 106267 36 100.0 37 .................................... TCGAAACTCGATGTTGTCAAAATCATCAATATCGAAA 106194 36 100.0 38 .................................... TATGTGGCCTCGCTCCTTTCCGCGCCCCCGTCCCTGAC 106120 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 100.0 37 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAACGCTGAGGAAGATTCCGTTTTATATTGCGACCTTGGCCTGCTATCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATGGGGCAACAATAATCACCCCCTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGTTAAGTCAGTTAAAATGAGGGGGCT # Right flank : AAAACCCTCGGCGGTATTGAACTAGCCTCCAAAGGTGCCGTTTTACCGTGGCCTCTGATGGTCCAGTCTCTGACATAATCTCGCGACAGGTCAGAAGCCTGTCTTCTTCAATCCAAAATAACGCCATAAACAGAAGAGTCAGGAAGGTCATACCTCTTCCAAAAACTGCGATGGTTCCTGCGTAAAGAATCCATATCCAGCCGATAGAAGCACTGTCAACATTACGAGGGTAAGGCAATCAGTTTCTGGGAACTCCGCAAGACGTTGCCCGTATTGCTATTACCTATCGAAGTTTTTACGTGTTTACGAGCATGTAGTCTTCGTTAAGATATTGGCTAAAATTCTCCGAGTTAAGCAACAAACACCACTTACACCTAGTCCTAAAAGAAACAGCGAAACCCAGCCCAGTCCAACGGTGGCAGTATCACCAGAAAACTTGAGTATGAGGATTCCTAGTACGCCTAGGGATATAAACAAAAGGTCTACGGAGAAAAAGCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 2038509-2040736 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019663.1 Corynebacterium ulcerans strain FH2016-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2038509 29 100.0 32 ............................. AAGCTCCGGGCGCTGCTCAAAATCAATATTTG 2038570 29 100.0 32 ............................. GTAATTAACGAAACCGCATCGGGCGGGCGCGG 2038631 29 100.0 32 ............................. TGCTTGCGGATCCTTCGAGGTCACGCTCTCGT 2038692 29 100.0 32 ............................. CCGCTAGCTTTGGTCGCCGCGCGGCGGCGGTC 2038753 29 100.0 32 ............................. CCCTGGAAAAGGAGAAAAAGTTGAATAAGGGC 2038814 29 100.0 32 ............................. CATCATTGGGGAATCCCCCCGAGCATGGGTGA 2038875 29 100.0 32 ............................. CATCCGGCGTTAGTGACCGCTGCGGTCGCAGC 2038936 29 100.0 32 ............................. CAAGCCCGATCGGGATCCTTCAAAAGCACATC 2038997 29 100.0 32 ............................. CATCGTGGTAACAGACTTTTTCACCTCAAGCG 2039058 29 100.0 32 ............................. TTCTTTCCCTGCCAGCAAGCAGCTGTATTCGA 2039119 29 100.0 32 ............................. TTTTGTCCTCCACTACCCGGATGGTGACGTGG 2039180 29 100.0 33 ............................. ACCAACGTCCGTTTCGATGAATTCTTCCAACGA 2039242 29 100.0 32 ............................. GCCTTAGCGAAGCTGCCCGCCTCCAAGGGTAT 2039303 29 100.0 32 ............................. AAGTTTTCCCTGCTCTGAATCAAGCCGCTTGG 2039364 29 100.0 32 ............................. TCCGCATCGTCGTAGTCACCCCTGAGGTAGTC 2039425 29 100.0 32 ............................. GGGCTCGGCTTCGGTTTTTCGCATTCCTGCGA 2039486 29 100.0 32 ............................. GTATCCTCCGTGGTCTTTGGTTTTGTCTTTTT 2039547 29 100.0 32 ............................. CGGAACGGCATGGGTCTACCGGTTTATAGGGG 2039608 29 100.0 32 ............................. GGGTGCTGGTTTAACTGGCCTTGATATTGCGA 2039669 29 100.0 32 ............................. GGGGGAAACACACGCCAGGTGCAGTTACTTGC 2039730 29 100.0 32 ............................. GCTTTTCTTCGAAATCATGCGGCAATTCTGAA 2039791 29 100.0 32 ............................. CGGTCAAAGAACGGTTTAGCTTCCCAGGCTGG 2039852 29 100.0 32 ............................. TGGCAAGGAATCCTCAACCAATTCGACGAAAT 2039913 29 100.0 32 ............................. TAAGGCCACGTCTGAATGGGTGAGCAATGAAT 2039974 29 96.6 32 ............................A CGTGCTTTATCGCCGCCACGCTCGCCGTGTGG 2040035 29 100.0 32 ............................. GCAGAAGAATTTGGAAGAAGCCCGTGAGGTTA 2040096 29 100.0 32 ............................. GGCGAAAAGGTAGCGGAGGAGTCCATGTCAAC 2040157 29 100.0 32 ............................. GGGGGATCAAAAAAATCCCCCACACCCGCCGC 2040218 29 100.0 32 ............................. GGCTAACCCTGCGGCGTTTGTTGTTGCTCGTT 2040279 29 100.0 32 ............................. GCACCATCAGGGAGATGGAAGACACCAGACTC 2040340 29 100.0 32 ............................. AAGGAAGAACAGGCGGAACTTGCAAATACCCT 2040401 29 100.0 33 ............................. AGCCACCCAAGAAAGAAGCAGCGCCCGTCCAGG 2040463 29 100.0 32 ............................. CCCCGGGGCTATCACCCCGTCGATGGGGAAGC 2040524 29 100.0 32 ............................. GGCGCTGGAAAGCTGGTCACACAGGATTGGAA 2040585 29 100.0 32 ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 2040646 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 2040707 29 82.8 0 ....................A...AGC.T | A [2040726] ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.4 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAACCCCAGAAACCCTCGAAACTGCGACTGTTCAACATCAAGGATCTGTACACCGTTGGCAGCTAACACACGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //