Array 1 225889-227177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPK010000006.1 Pseudomonas gingeri strain D1001 run0228_D1001_S20_L004_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 225889 28 100.0 32 ............................ TACAAGTTCGCCGACAAGTCCACCGCGCAGAT 225949 28 100.0 32 ............................ TGTCTGCCGAAAAATGATCTGGCGATCCGAAA 226009 28 100.0 32 ............................ ATTCGCGCAGGAATTCATCATATCCACCCAGG 226069 28 100.0 32 ............................ ATACGTCGCGGAGTTCGTTCGACTGCTGGTGG 226129 28 100.0 32 ............................ AGAGCCTTGTCGAACATCACTTCAGCAATCTT 226189 28 100.0 32 ............................ ATCGACGTTCAGCCAGTCATCCAGCGAGTTGT 226249 28 100.0 32 ............................ AATCAGGTCGGCGCAACTTGTGCTGTGGAAGA 226309 28 100.0 32 ............................ AAGACCATCCCTACGACCATTGAGCGCAAAGG 226369 28 100.0 32 ............................ TACAATGGCGACTTCGAAGGCGCTGACTGGAT 226429 28 100.0 32 ............................ AAGAACCTTATCGATGCTGCACGGAACCACAT 226489 28 100.0 32 ............................ TTTGCGCGTGAGGGGATTGTGCATTCTGTTGC 226549 28 100.0 32 ............................ TAACGCGTCTACCACTTCATCGACGGACTTGG 226609 28 100.0 32 ............................ GATCGGTGGAACGATGAATTTCACCGATGCAG 226669 28 100.0 32 ............................ CAACTGGTGGGCAAAGACCGCCTGGCTGGCAC 226729 28 100.0 32 ............................ TTCAACGTTTGCAAAGTACGAACGCGGAGAAA 226789 28 100.0 32 ............................ ACAGCCATTTGAAGACCTTGTGCCCGTTGTCT 226849 28 100.0 33 ............................ ATGGTGGTCAGGCTGCCACCACAGATCCCCCAT 226910 28 100.0 32 ............................ GCACATGTGCACCTGCTGGGTCTTTGTGAACG 226970 28 96.4 32 ............A............... TTGACCGTCGGAACACCGGCCTCGATGTGAGC 227030 28 96.4 32 ............A............... TGTCGCGCCTGGCGGGCTGGAAAAAGGTTGTG 227090 28 96.4 32 ............A............... TTCAGGCCGTCGAACGACTTGAACAGCTCGGC 227150 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.3 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TCAGGTCGCCCCTGATTCAAAAAAGGAACAGTACCTTTTCTGAATCACCTTTGGACATGTCCGAAATATGAAAATGTGAGTGACCTCAGAATCGTCACGCGCCTAGGGCTTCCATCAGATCCCGACCGAAGGCCGTGGCGACGTACATGTGATCTGTTCGCGGCCTCTCAACCGGCAGAGGAAACGAAGGTAATGACCGTGCTGGCGATGGGGCAGAGGAACACTGCGGGCCGCCAGCGTCTCGCAAAATCCCGAGTGGGGCATGCGCGCCGGGAGATGATGAGCCGCAGCTTCACCACGCGGCTGGATCAGCTTTGGCGGGTGTCTTGTTGCTGAGCCCAGAGGAGGCGTCACGAAGTGTCATGGCTGACCCTCTTTTTTGGGTGAGATCCCGCCGCTAATAAAATCAATCACTTACGGAACGGCAAAAAAAGAGGGGTAAACTGGCAATTATTGGGGATTTGCCTTTGCAGGCAGAGCCTTATCACCGAAAGTGTCTA # Right flank : ACAGAACTAGAACCACACACCGGCGGCTAGGCCGTTCGCTGCCGTATAGGTGTTTATTGAGCGGGCCTAGTCAGTAGATGGAAGCCCGAAGCACATAGGTAACCTGATGTGGACGCTGTTCGCCCATTACTCCCAGTTGAGCGATGGAAGGCCGAAGTCGTACCAGATGGACCACAGGATAACCAGCAGACCGGCAAGCACCTCGCGGCGGCGATATAACACCAGGTAGCGCAATACCACGCTCAGGTCGGAACGACTCAATGCACGTAGGCTTTGCCCGTGGGACATCAGGCGCAACGCATCCTCAGGTGTGTCGTGGTGGCGGCGGGAGTCATAGCCATATCGACGATAGGCCCCTGATGAGCCGGTGTACCCCAGTAGGATTTCACCCTCTAGATGGATCAGGCGTGGCCTCAGGTTCAGGGACTCCATCAGGTCCGTAGCGCTGCTGACGATGGAGCTCACTCGGTCTTCGCCAAGGATGCCGATCGCATCGCCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 228758-229504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPK010000006.1 Pseudomonas gingeri strain D1001 run0228_D1001_S20_L004_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 228758 28 100.0 32 ............................ CCAGAGAAAACCATCTTGATTGCCTCCCCCAG 228818 28 100.0 32 ............................ GTATCACGAACGGTCACCTTCCGGCCCCAGTG 228878 28 100.0 32 ............................ TGATTGAAAAGTTTGTCAGCATGATTGTCTGC 228938 28 100.0 32 ............................ TCGATGGCTCTTCTCATGAATCTGTCAGCCTG 228998 28 100.0 32 ............................ AGGTGCGCGATCAGCCGCGGGAAAGAGCAGGG 229058 28 100.0 32 ............................ CCTCTTTATTGGCATGCGGTTTGCCGTTGAGG 229118 28 100.0 32 ............................ ACTTACGAGCCTGCGTCATTGCCCATCAGCCT 229178 28 100.0 32 ............................ TAACCGGGTGAACCAACGAATGGAGAGAGTCA 229238 28 71.4 92 ....................NNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCGTGCAGGCAGCTCAGAAGAGTCATTACCGCCTTGTTCGCATTGATCTGCC 229358 28 100.0 32 ............................ GATTATGAGTCGGACGCTCTAACCATCTGAGC 229418 28 85.7 29 .C.........CAT.............. AAAGGCGGATTGCTGTTCACCGAGGTGGC 229475 28 67.9 0 .CA...C....CAT.A..G..G...... | GT [229479] ========== ====== ====== ====== ============================ ============================================================================================ ================== 12 28 93.8 37 GTTCACTGCCGTGCAGGCAGCTCAGAAA # Left flank : GTCATGACAGGGATGAAAAAACTGCTGGCATTGGGCAGGCCATTGTTTGGGTCATTAGTGTCAGGCATAGGCGTCCCTTCCGTGTGAGAGCCCCCAGGTGCCCATGCCGCGCAGACCTATCCAAGGCTTATACGCTGAGTATTGCTGCAGGATGACGAGGGCGATTGCTATCAGCGTGAAACAGTAGCAGCAATTGGAAAGCCCACAAGCATTGGCTCCATGAGCGCTGACTACCTCGCTCAATGTGCTGCAACATCTGAGCTGACTGTTGAGGCGCATCGATGCCCGTGTTGCGCCGCAGATGTTGTCTCGGCCAATCTCGTGAATGGGCTTGCTCTCAAGGTCGGTTGCCGATAAGCCTGCGAGCAGACCCTCTTTTTTCAAGATGAAATACCACCTTTAGAAATCAAAGACTTACAGGAGAGTGAAAAAATAGGGGTAAAGTTGGTGTTGCAGATCATTTGTCTTTTCGAACAATACGTTATCTTCGGATTGCTCTA # Right flank : ATATAAGGACATATTAGAGAATTCTCTATAGCGAGCGCGCTGTCGCATAGGCAGCATGACGGCGTGGCTTGGCTTAACACCTGCAGACCGGTGGTTCGGCAGTACGAACGGTTGCCGAAAAGCCAAGTCGGGCAGCATGTGGTTGTACCTGTGGCTGTTGGCACATTGCCATCCTTTCAGTTATAACCCTGCTCAACGATTAAACTGATGTAATCGGCTGCTCGCTCATGGAAGAAATCCGCTCCTCCGATCTCAAGACGATCCTGCATTCCAAACGCGCCAATATCTACTACCTGCAGCACTGCCGGGTGTTGGTCAATGGCGGTCGGGTCGAGTATGTGACCGACGCCGGCAAGCAATCGCTCTACTGGAACATCCCCATTGCCAACACCACGACCGTATTGCTGGGGACCGGAACCTCGGTGACCCAGGCGGCGATGCGTGAGCTGGCCCGGGCCGGGGTGTTGGTGGGCTTTTGCGGAGGAGGGGGTACGCCGCTG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.48, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 238304-239051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAPK010000006.1 Pseudomonas gingeri strain D1001 run0228_D1001_S20_L004_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 238304 28 100.0 33 ............................ ACGAACGCATCGGTATCGCCGTACTTCCTCAAC 238365 28 100.0 32 ............................ TGCTGCAGCCTGTTGCGCGCGCAGACGCCAGA 238425 28 100.0 32 ............................ ATGCGGTACACGATATAACGCTGATTGTAGTC 238485 28 100.0 32 ............................ CATCGATCCCGGCGTCACGGCCTTGTGCGCGC 238545 28 100.0 32 ............................ TACCTGCGCACGGATGAGTACATCGACACCTT 238605 28 100.0 32 ............................ TTGCGCCAGTCTCGGGCGCCGCATAGGCATTT 238665 28 100.0 32 ............................ ATGTTAGCGAACAAGGCTGAGTGCGAGGCAGC 238725 28 100.0 32 ............................ ATCAACGTGGCTGTGTTGACGACTGGCGTGAA 238785 28 100.0 32 ............................ AGCCCCCAAGGTCGCTCTGGCCTGGCACAGAG 238845 28 100.0 32 ............................ AGAACCGGCGGGCTGCTCATACTGCCAGCGAC 238905 28 100.0 32 ............................ TGACCGCAGCGGATGAGCGGGCGGATGTGTTG 238965 28 100.0 32 ............................ CTCCCCCTTCAAAGTCAGCCGCTATAGCGGCA 239025 27 92.9 0 ......................-....C | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.5 32 GCTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCAGTTGCTGGCGCTGAACTGGCTGACCGGTATGCGGGACCATGTGCAACTCAGTGAGGTGACGATTGTGCCGGTGCAGGTACGTTACCGGCAGGTCAGTCGCGTGCAGGTGGACAGCAACCCGGAGCGCTTGCGCCGGCGCCTGATCAAGCGCCATGGCATCAGTGAGCAAGAGGCCCGCGAGCGCATTCCGGACAGCGCCGCCAAGCGCTGCAACTTGCCCTTCGTCAACCTTCGTAGCAACGGTACCGGACAGGCATTTGTGCTGTTCATTCGCCACGGGTCCATTGTGGACACCGCCCAGGCGGGCACCTTCAACGGCTACGGTCTGAGCAGCACCGCCACCATCCCCTGGTTCTGATCTTCTGGACCCTCTTTTTTGAGTGAGGCAGGCACCTTCGTAAAATCAAGGACTTACGAAGGTGCCAAAAAAGAGGGGTAAAGACCCATTTCTCGAGTATTTACCTTTGCAGACAGGGCTTTACCGGGAAAGTCGTCTA # Right flank : CGCACTCATGTAGAGGCGAGCCGGGAAATCTGTCGCAATACTCTGCGCGAGGTGACGTCAGGAGTTGCTCGGCGCAGGTCGATTTCACGGCCACCGTCATGCCCTGATCGTTACTCCCCTTGGTAACGACCTTCTCTGTGGTTTATGGAGAGAATGAGATTGAGTGTGATGGCGCTCAGTACAGACCACATCACCCGGCTGGGTTCGATAAATAAAAGCGCGCAAAGCACGATTGAGCTGTCTGCCAACATCTGGATGTTTCCGGCACGCCAGCCGAATTTGTTTTGCAGATAGAGAACGGCGATGCCAATGCCACCAAGACTGGTGCGGTGGCGAAACAATACCAATGTACCGATTCCCAAAAGAATCCCGCCGTTGATACTGGCGTGCGCCGGGTGTACCCAGCCGATAGTGACCGTCATGGGGATCAGGGTTGTCATGAGTGAAAGCAGGGTGACCGCGCTGAATGTTTTCAGCGTAAACGCAATGCCCATGCGCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //