Array 1 273-2948 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMHH01000019.1 Brucella endophytica strain CGMCC 1.15082 sequence19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 273 35 97.2 30 ...............-.................... CTTCACTCCGTTGCGGATGTGCCCGAAAGG 338 36 100.0 30 .................................... AGCCTGCCGGTAATCCGTATCCTTCATCTG 404 36 100.0 30 .................................... GCAGCCTGGATCCGCACCTCGCAGCGCACC 470 36 100.0 30 .................................... AACCCTCTATTTCAGCCGGTTGCGGACGCG 536 36 100.0 30 .................................... CCATCGTGATTTGCCCCCACTGAAAATAAC 602 36 100.0 30 .................................... AACCATCTCGTCGCCGTGAAGACGGCGGCG 668 36 100.0 30 .................................... CCTCAACTCCGTGACGATATCGTCTTTGCA 734 36 100.0 31 .................................... GCGAACCGGCGGCTCTGGCTGGAGGCGGCCA 801 36 100.0 30 .................................... GTTTTCGGAGTTTTCGATGCGGTCATAATC 867 36 100.0 30 .................................... CGCATCGGGCGGCGGCATCGTGTCGCCGCC 933 36 100.0 30 .................................... GGATGGCGGTTGACCGGGCATCGTTCGGTG 999 36 100.0 30 .................................... CTCCCGCGCCGTGCGGCGGCTATGGCAGGA 1065 36 100.0 30 .................................... ACCAGATCGAGCGGGCCGGACCAAACCGAT 1131 36 100.0 30 .................................... CGCAGTTGGCCGACGCAATCTGAAAACCCC 1197 36 100.0 30 .................................... TATGCAGCGACCGTCGCGGGGGTGCCCGGC 1263 36 100.0 30 .................................... AGAAGCCCAAGGCTCAGGCGTCAAAGACCG 1329 36 100.0 30 .................................... GGGACGCGCGATGCCCGAATGCTCGCTTTG 1395 36 100.0 30 .................................... GCTTGGTGCCTTCGCCGTTGCTTTTTTCCT 1461 36 100.0 30 .................................... TCCTCTCTCGAAGGCTTGCTTTCCAGCATC 1527 36 100.0 30 .................................... TGCGGTGGCGTGATCGAAGACAGCCCTTCA 1593 36 100.0 30 .................................... AGCCGTCAGAACAGGTCCAGCACGGCGTTT 1659 36 100.0 30 .................................... CGATACCGCGAGCGGCACCTGTTTCATCCG 1725 36 100.0 30 .................................... TAGTGTTGTATCAATGGATTGGACTTCACC 1791 36 100.0 30 .................................... GTTTGTAGTCGGTGCAAACTGAATACCAAG 1857 36 100.0 30 .................................... TTGCCCGATGGGTCGGAAATCACGAACTGG 1923 36 100.0 30 .................................... ACAATCACCGCGGTTAAACCAATCAGAATC 1989 36 100.0 30 .................................... GCCTCGGGCAAGGAAGAGCGCAACGCCGTA 2055 36 100.0 30 .................................... GGTGTAACCCGTTTCCCGGCGCCAGTTGAA 2121 36 100.0 30 .................................... GACGCGCAAACCGGCGAGATCGAAATTCTC 2187 36 100.0 30 .................................... GTGATCCTCTCCATTGAATATGATGACGTA 2253 36 100.0 30 .................................... AGTCAGCACCGACAGCAACGGCAACCGGAT 2319 36 100.0 30 .................................... ACCAGTCGGGCCACCGCAGCGAGCAACCTG 2385 36 100.0 30 .................................... TTAGTCATATGGGAGCCGCTACACACGAAA 2451 36 100.0 30 .................................... GGTTCAAGGACTTTCAATGTCCTGAAACAC 2517 36 100.0 30 .................................... GTCTCTAAGGCCGCTAAGGCCGACTTGTGT 2583 36 100.0 30 .................................... TCGCCTGGGTGGCGGATGCGCCCGGCATGT 2649 36 100.0 30 .................................... TCATTGCGGATGCGACCGGCTTTGATTTGG 2715 36 100.0 30 .................................... AGCCGACGCGAACCGTCATGGCCGGTGGCG 2781 36 100.0 30 .................................... CCTGCAGGGCTCGCAGCGCTCGCTTAACGA 2847 36 100.0 30 .................................... CTACTCGCCTCGCTGGAGACCGTCTTCAGC 2913 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.9 30 GCCGTGGTTTCCCTACCGATTTGCCCATGGTAGGTT # Left flank : CGCTACCCCTTACCCGGGCCGGACTTTCACCGGCTGGAACGCGCCAGCTTCGCCTGGCGCACCAGAAATTCCACTTATCCCCGCTGTTCAAATTTCCCGAGCCAGCTCTAAGGCCGTCCCGGCTCGTTATACATGCCATAGACGGCGTCGGCCGGAAACGCTCGAACAAGCCCTTCCTCTACCATCAGGCGGGCCCCACCAAGCCCCTCCTCGGCCGGCTGGAAATAAATTGCACATGGTGGTTGCCCGCTGCGTCGTCTGCTGCGAGATGTG # Right flank : TACCTTTGCGACAACCGGCTGAAACTGCTGTGATTTTTGCCTTTTTGACGAGGCGGAAATCACAGCAGGACCATTTGAGTCGAGGCGAATCGCTCGGTTTTTGGAGCAAGCCCCAGCATAAGTTCCATGCGCCCATACTGCTTGTCCGTTACCTGCAACGTCCGTACGCTTCCTTCCTTGGGCAGCGCCGAGCGGACGCGGCGGATGTGTTTATCCACCGCATCTTGCCCGCGGCAAATGCGGGCGTAAACAGAAAATTGCAGCATGATGAAGCCGTCGTCCCTCAGCGCGTTGCGGAAGCGGGTCGCCCGCCGCCGCTGCTCCTTCGTTCCGACGGGAAGATCGAAAAAGACCATGAGCCACATGAAACGGACATCCTCGGCTTTCATTGCTCGACATCAATCCTCGCCGGCCCAGCCTGGGGTTTGCAGAAGCGCCGCGCTGTTGTGCTCCATGGCGCGGACCATGGACATGGCGACTGCCTCGGTGGCTGCCAGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGTTTCCCTACCGATTTGCCCATGGTAGGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCGTGGCTTCCCTACCGATTTCCCCGTGGTAGGCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //