Array 1 52902-53357 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVV01000033.1 Streptomyces omiyaensis strain JCM 4806 sequence033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52902 29 100.0 32 ............................. GGCATCGGCCAGTACCCCGGCGGCGGGGACGA 52963 29 100.0 32 ............................. AACTACATCGCCGCCGTCGAGCGAGACGCCGA 53024 29 100.0 32 ............................. ATCATCGTCGGCCAGGACGGCAACCTGATCAA 53085 29 100.0 32 ............................. GTCGCGCCCGGCTCCCCGCCCGCGCGAGCGTT 53146 29 100.0 32 ............................. GCCCACACGGGCGGCGGGGCGAGGAGCGCGGA 53207 29 100.0 32 ............................. GTCCCGTCCTCCGTGTCGGGGCGGTCCATGTG 53268 29 100.0 32 ............................. GTGGCCGGTGCGGAGGCGAGGATGCCGGACTC 53329 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 CTGCTCCCCGCTCGCGCGGGGATGAACCC # Left flank : GGCCGACCGTTGGACCGAGCTGAATCAACAGTGCGCCCTGCTCGGTGAAAGGGGGACTGTGCGCCGATTCTTCGGTGTGCCACCCGAGCCTGCGGCAGGGGCGTCTCCAGCACGGTTGTCAGGCGTTTGGCCGGTGCGGTCGGGCTGCGCAAGGCCGCGAAGACTGCTTCCCGGCCCCGGGAGCGGGCCATCCGGGTGTTCCCCCGCCCGCTCACCGGCCTCCCGACCGTGCGCGCCGACTTCCTGCGCGCCGAGGCCGGCCGTGACGGTGAGCACCTGAACGTCCGCGAAGCGATCACCCGCGCCGCCGGACCCGGCACCGCCCACCGAGAGCTCCAGCGAACGGCCGGCGACGTGCTTCAGGCCCCTGGGGAACCCGGGGCGGCACGGGGTCGACAGGGGGCTGCTCGGGGTCTTCGTGGAGGGTGGGTGGTTTGTCTGTTTCGGTGAAAGTTGCTTGGGAGGGGGTTGGTGTCGGGTAGAACTGCTGGCCAGGAAGA # Right flank : CCGGTGGCGCGCGGCCGGGGAGAGTGCGGCGAAGATTCCGGCGCCGATCATCGACGCCACGCCGACCATGACGGCATCCGGCACGCCCAGGTTCCGTCGCAACTCCTCCGGGACACCGGCGGCGGCCGATGGCTTGCTCGTGCGTGCACTCCTCGGCGGCAGGGCGGCGTCCGTCGTACGGGCTCCGACATCGGCCCACGGGAGAGGAGGCGCGCGAGCCCCTTGGGTCGACCCCGTGGCTCTGCGACTGGTACGGGGCCGGGCCGGACGGTGCCGTGGCTGCGACCACCGTCCGGCCCGGAGCGCGTGGGGCTCTGTGTGTCAGGCCGCGTGCTCGTGTTCGCAGGCGTCCTCGATGCCGTACGTCTCCCAGGCGGGGAAGTCGTTTTCGGCGGGCACGGTCTCGTCCGGCACGAGGAGGCAGGCGTCGAGGGCCGCGCGGAGCGCGTCGGCGCGCAGGCCGGTGCCGATGAAGACCAGTTCCTGGCCCTGCGTGGTCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCTCGCGCGGGGATGAACCC # Alternate repeat : CTGCTCCCCGCTCGCGCGGGGATGAACCCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCTCGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 76-1935 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVV01000058.1 Streptomyces omiyaensis strain JCM 4806 sequence058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 76 30 96.7 31 .............................T CGCTGCCCGTGAGTACGTCGAGCAGGTTGTC 137 30 96.7 31 .............................G CCGATCCGGAAAGCGCGCGCCGTCGGCGCCG 198 30 100.0 31 .............................. AGGTGCGGGCAACCCGCTGCTCGCCCTCGCG 259 30 96.7 31 .............................A CGGTGACGAAGGCGCCGACGGTGACGGCGTC 320 30 100.0 31 .............................. GGCCGCAAGGTCGGGACTCACTGCACTGAGG 381 30 96.7 31 .............................A AGCTCGGGTGGGTCCTCCTCGCCGTCACGAT 442 30 100.0 31 .............................. CGGGGTTGTCGGCCGCCGCCCTGCGCCCGAT 503 30 96.7 31 .............................G GTCCTCCTCCGGCAGTCGATCCGGACCCCCG 564 30 96.7 31 .............................G TCGCGCCCCGGCCGGGGCCGTCGTCGCGCAG 625 30 96.7 31 .............................A TGTACCTCCACTCACGGCGCCTCTACACCGA 686 30 100.0 31 .............................. CGCCGGGCCCCTGCGAGTGGCCCATCGATAC 747 30 96.7 31 .............................T CTTGCTCCTGGTGGTGGAAGACGCGAAGCCC 808 30 96.7 31 .............................A TCTCCCGCAGGTGGCTGACCGCGAGTCTGTC 869 30 96.7 31 .............................G AGGAGGGGGAGTGGTCCTCTCGGCTTCGTGA 930 30 100.0 31 .............................. GGACGACTACTCTTCGAACAAAGCTGAGGGG 991 30 96.7 31 .............................T GTGCCACGCACGGTGGGTCCGGGGACGACTA 1052 30 86.7 31 ...........A.C.A.............T CCGCGTCCACGCCGACGAAGGCGATCCGGCC 1113 30 93.3 31 ...........A.C................ TTCAGACCCGACCCCGACCTCTACGCCAACG 1174 30 90.0 31 ...........A.C...............T ACGTCTCCGCCCGGTCGCTCGCGGCCAAGGC 1235 30 90.0 31 ...........A.C...............T CCGCGGGGGTGTACGCGCGGCCCAGGACCTC 1296 30 86.7 31 ...........A.C...........T...T GGAGCATTGCGTCGGCGTCCCCGGCGGGCAT 1357 30 96.7 31 .............................G GCACCGCGTCCCGCCTCTACACGGCGACGGC 1418 29 86.7 32 ...T........T...T......-...... TCGGTCGGGCACGGGACCTCGACGCAGGTCTT 1479 30 90.0 31 ...T.....................C...T GCAAGGGGTCGATCATCGAGGCCCGAGAGCT 1540 30 90.0 31 .............C........A......G AAACCGGCTGGGGCTGGCTCCTTCCCGGTCG 1601 30 83.3 31 ......TT...A.C...........C.... CGCCCCTGATCCGCCAGTTCCACGCCACAGC 1662 30 90.0 31 ............T...T............A CGGACATCGAGTCGGGCGACGGGGGCGAATC 1723 30 100.0 31 .............................. GGAACGAGGGGACCACGATGCGGTCGATGAG 1784 30 90.0 31 ...T....T....................G TGCTACCCACCCTTGCCCACGAGGGGACCAC 1845 29 90.0 31 .............-...........C...T TCGCCGGGCGGAAAGGCGAAGAACTACGCGT C [1855] 1906 29 80.0 0 .....G..T....-...........CT..A | A [1917] ========== ====== ====== ====== ============================== ================================ ================== 31 30 93.8 31 CTGCTCCCCGCTCGCGCGGGGATGGACCCC # Left flank : GTGGGTGGTTTGTCTGTTTCGGTAAAAGTTGCTTGGGAGGGGGCTGGTGTGGGGTAGAACTGCTGGTCAGCAAGAC # Right flank : ACACCGCCTGTCGCGGCACGTGACGCGGAACCCTGCTCTCTGCACCTGCGGTGGTTGTTCCGTCGCTGGGTGTTTGTGCTGGTCTTTAACTGGCTGACGTTACGTCACAAACTGTTGTGATCGGTGTTGTTCATGGAATCTGCTGTGGGTTTCGGGCTTGTTTCTGGATCTTGTGTTCATGGTGTGGAGGTGGGGTGTATTCCTCTTCCATGGCACGTGAGGGGGAAGGCCGTTCGGGCCTTCGGAGCCGTCTTGAGGGGCCAGTGCTTGCGCTGTGGGGCAAGCATGATCGGGACTCGGACGGGTGGCTGCCGCTGTGGCAGCACATGGAGGACAGCGCGGCGGTGGCCGGGAGGCTGTGGGATCGGTGGCTGCCGTGGAGTGTGCGCCGGCTGATCGGGCGGGCGTTGCCGGGGGGCGAGGCAGACGGTCGTCTGCTGGCGGTGTGGCTGGCCGCGGTGCACGACATCGGGAAGGCGACTCCGGCGTTCGCCTGCCAG # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCTCGCGCGGGGATGGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11562-11935 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVV01000058.1 Streptomyces omiyaensis strain JCM 4806 sequence058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================= ================== 11562 29 82.8 31 G..GG....C.C................. CTCACCCACCTACCCCCGCCGCAGCCAGCCC G [11568] 11623 29 69.0 71 ........T..GT.T.......G..GTGG GTGGTTTGTCTGTTTCGGTGAAAGTTGCTTGGAAGGGGGTTGGTGTGGGGTAGAACTGCTGGTCAGCAAGA G [11640] 11724 29 100.0 32 ............................. TTCGCCGAGGCGAAGCTGACGACGCGGGGGAT 11785 29 100.0 32 ............................. GGCCGCTGCCCGAACGCGCACGGCCTCCCGGC 11846 29 96.6 32 ............................T GGTCCAGTTGACCGGAACGTTGTGGGTCTCAA 11907 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================================= ================== 6 29 91.4 40 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : AACTACGGCGACGCCAACGACCCCACCCACGACGGGCTGGTGCTCACCTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCCGGCCTGCGAGGCTTCCTCACCCGCTGGCTCCTCGAAATCTCCGCCGGCGTCTTCATCGGCAACCCCTCGGCACGCATCCGCGACATCCTCTGGAACGAAGTCCAGCAATACGCCGACCAAGGCCGGGCCCTCCTCGCCCACACCACCAACAACGAACAGGGCTACACCTTCCGCACCTTCGACCACACCTGGCACCCCAAAGACCACGAAGGTCTGACTCTGATCCACCGCCCTTCCTCCGCTTCACCGGCACCGACGACCGACCCCGCCAAGAAGTCCGGATGGAGCAAAGCGTCCAAGCGCCGGCGCTTCGGAGGCCGATAGGGCTACGGCCGACGAGGAGGAGACCAGCAAGGCGTCAGAACGCGGGACAGCGCCAAACAGGCTGCCCCCTCCCACACTCCCGCCCTATGCCAT # Right flank : CACGTACAAGGAGCCTCCGCCAACTTGAAGTCGCAGGTCAAAGGGCTGGTGTGACCGGTTCTCGGACTGCTCGTGCTGGTCACGGGCGATTGTCTGAGTAGTAGATCGTCCGTCAGCGCGGTCGACGCCTGAGTCGAAAGGCGGTCGACGGGATCATCTCGTGCGGGGGATCATGCGTAGGTGTCGCCGATCGAAGCCGCAACCGATGACCTGCGAGACCTCGCTGTTCTCTGGAGTATCGGCGAGGCCCACGCTCACGATGTCGTCGAGGCTGCCTGCGCGGCACTCGTTGCCGGACTGGACAGCCCGGCACTGCGCATTCTGGCCGGATACACACGTGCCGAGGCGGAGTACGACGTTCCCGACCTGCTTCCCGTCGTACTCGATGAGCTGGACCTCGTGTTCTACCCGCACGACAGCGAGGCCGGGCAGGACGCTGCCGTGCAGGCGCTCGCGCACCAGATGCTGGCGGGCCGGCTGACGCCGCGAGAGCTTGCTAT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.57, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 14200-15448 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVV01000058.1 Streptomyces omiyaensis strain JCM 4806 sequence058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14200 29 100.0 32 ............................. TCCCCGCGCTGGACCCGGTCGCGCTCGACACC 14261 29 100.0 32 ............................. TTGCACAGGTACCAGAGTTCGTCGGCGAAGAG 14322 29 100.0 32 ............................. GCCATCACCTCCTACATCAAGCGCATCAGCGA 14383 29 100.0 32 ............................. ATCACCTCGGCCGACGGCCGACTTCCCGGGCC 14444 29 100.0 32 ............................. GTCCGGCCGGCGGCCGCGGCGTCTATGTACTT 14505 29 100.0 32 ............................. GGGATCGTCTGTGTCATCCCTCGTCAGCTCAA 14566 29 100.0 32 ............................. CGCCCATGCGCCGAAGCGGGGCTCCAGGATGC 14627 29 100.0 32 ............................. CGGGGTCCTTCTGTGCCGGGACGTCGTCCTGC 14688 29 100.0 32 ............................. TGCGTGGGCGGCTCGCAGGAGCGGCACACCCG 14749 28 96.6 33 .........................-... ACCGGCGGCCGGACGATGATGCCCCGGGCCGGC 14810 29 100.0 32 ............................. CTGCGGATGCTGAACCGGCAGGTCCAGAACGA 14871 29 100.0 32 ............................. GGGGTGCCGGCCGAGCCGAAAACCTCCGAAGA 14932 29 100.0 32 ............................. AAGGCCATCGCGGACGTCGCCACCGCCCTCGG 14993 29 100.0 32 ............................. GTTTCCGGCTGGACGTGGGTCACGGCGATCTG 15054 29 96.6 32 .................A........... GACGCCGTCGAGGAGTCCGGGCGGAACTCAGC 15115 29 89.7 31 ........G..T.G............... ACGCGACCAAGTACGGCGGGGCCTTCGTTGG T [15140] 15176 29 89.7 32 ...........T.G...........A... ACCCCGATTGGGGCGCGCCCTGCGGTGAGACC 15237 29 86.2 32 ...........T.G...A.......A... TACCTGGTCATCGCCAACTTCGAGTCCTCGGC 15298 29 89.7 32 ...........T.G...........A... ACGGGAAAGCTGGTGCAGGTTCAGACGCCTCG 15359 29 89.7 32 ...........T.G...........A... AGTCAGTATCCGTACTTGGGGAAGCCGGACGC 15420 29 82.8 0 ...T......TT.G...........A... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 96.2 32 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : CGCCTGATCTGGATATCCGCCGCCCGGCCCGGCCGCACCCACGACAACACCGCCGCCCGCCACGACCACATCCTGGCCCACCTGCGCGCCGCCGGCCTCGGAGCGCTGGCCGACCTCGGCTTCCGCGGCCTGGACAACGACATCCTCGACCCCGTAGTCGTCACCGGCTACATCGCCACTCGTACCCACAAGCTCACTCGAGGCGAGAAGGAGGCCAACCGTGTCCTCGCCGTCGGACGGGCACCGGTTGAGCACGGCTTCGCCCACCTCAAGAACTGGCGGATCCTCACCAAACTCCGCACCGACCCCGCCCGCGCCACCCGCCTCCTGCGCGCCCTGCTCGTCCTGACGAACCTCGAAATCAACCGCTGACGGATGATCTTCTCCGTGGGCTTCCGCCCACGACCAGCACGAGTACCCCGAGGATCGGTCACACCAGCCCTTTGATCTGCGACTTCAAGTTGGCGGAGGCTCAAGGAAGGCCACTACGGCCTGTTTCA # Right flank : GTCTGTGGTGCAC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 76-654 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVV01000082.1 Streptomyces omiyaensis strain JCM 4806 sequence082, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 76 30 96.7 31 .............................C TGATAGGAAGCCCTATCAGCAGGGCCGTTCA 137 30 96.7 31 .............................T CTCCGACGACGGCCACGGCGGCTCGCGCGTG 198 30 100.0 31 .............................. ACAGCGGCCTGGAAAGGCCGGCCCCCACCCG 259 30 96.7 31 .............................T GGCTGATGGCCCCGGTCCGGGACGCCATCGC 320 30 96.7 31 .............................A CGCTCACCGTCGGCGCCACGACGTACGGTCT 381 30 100.0 31 .............................. ACGGCGTGAACGTCCGGCCGAACCTGACGAT 442 30 96.7 31 .............................T GAGAGAAATCGCCTCCGAACAGGCGGACGTT 503 30 100.0 31 .............................. CAACCATGTCGCCCAGGATGCGGATCGTCCG 564 30 93.3 31 ............................TC TCGCGGACGGCGCTCCGCATCACCTGGTGTG 625 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 10 30 97.3 31 CTGCTCCCCGCTCGCGCGGGGATGGACCCG # Left flank : GTGGGTGGTTTGTCTGTTTCGGTAAAAGTTGCTTGGGAGGGGGCTGGTGTGGGGTAGAACTGCTGGTCAGCAAGAC # Right flank : CATTGAGCTCCCGCCAACTTGAAGGCGCAGGTCAAAGGGCTGGCGTGACCGGTCCCCGGGATACTCGTGCTGGCCATGGGCGGGAGTTCGCGGGGAAGATCATCGGTCAGCAGCTGACTTCGAGGTTCGTCAGCACGAGCAGGGCGTGCAGGAGGTGGGTGGCACGGGAGGGCGGTGCGGAGTTGGTGTCTGGCTCAGGCAGGTGGTCGGAAGCCGACCTGCCAGTGCCACATGCCACCCCGGCAGCTCAGGACCGTGCCACCGTCCCTCACATACAGGACATCCTCGTTTTGATCCCAGGCCATGCGCAGCAGCTCGTCCTGGGGATCCCCTTGCAGCACCCGCTTCCACAGCGGGCCCACCGGGGCGCCGAGGGTCTCCATGCCGAGGGACCGCACGCCCTTAAGGATCAGCAGCGCAGGCCCGATTCGCCGGTACGGCATCACTTCGGACTCCACGTACGCATCGGAGAAAGCCAGCTCGATGTGCAGGGATCCATC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCTCGCGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1429-133 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVV01000079.1 Streptomyces omiyaensis strain JCM 4806 sequence079, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1428 29 93.1 32 ............T............A... CTCTCCGTGAAGTACGGCGGCGAGACCGCCCT 1367 29 89.7 32 .............CT..........A... TTGGTCGGCGCCACGAAGGTGCCGTAGGTCAC 1306 29 89.7 32 G................A.......A... TGGGTGCGCGTCGCCCAGGTCGGCGCCGGAGC 1245 29 96.6 32 .........................A... GTCGGCACGGTCAGCTCGTCCGCCGGCGGCCC 1184 29 100.0 32 ............................. TCCTCCAGCGCAACCCCGGTCAGCTTCCCCGT 1123 29 93.1 32 .........................TT.. CGCGGTGCGGATCCGGCGGTGGGTCCTGCCGT 1062 29 96.6 32 .........................A... GTGGCGCTGGGTGTCGAGTCGGATCATCGGCC 1001 29 89.7 32 ...........A.C.T............. TCGGAGAAGAACAAGCGCCCGGCACCCCCTGA 940 29 82.8 32 ...T.T.....A.C.........C..... ATTTTGAAGCTCGCATCCACGCCGTCCGGCTC 879 29 86.2 32 ...........A.C.T.........A... GCGCGGGTGTGGTCCGGCGACGAGCGCACCAT 818 29 89.7 32 ...........A.T..............G CCGAAGCCGGACCCGCCGGCCCCCGGGCCGAA 757 29 86.2 22 ...T.......A.C...A........... AATTGGCCGCCGGCGGAGGGAA Deletion [707] 706 25 69.0 32 ----..G....A.CT...A.......... CAGATCCGCCCGTAGCGGACCAGGCCGATGGT 649 29 89.7 32 ...........A.C...........T... TTGGTGTCGGGATCCTCGGCCATCATCACGCG 588 29 89.7 32 ...........A.C...........A... TGCTGTACCCGGAAGCGGACGTTGGGCAGCGC 527 29 100.0 32 ............................. ACGCCAGTGCGGTCGATGGTGTTGTCGCGGCT 466 29 93.1 32 ...........A.C............... CCGGGCAAGCAGTGGCTCGGAGGCGAGGCGTT 405 29 93.1 32 ............T............A... GAGTGCTGGACCAGCCCCGAGCAGTCCCAGTG 344 29 89.7 31 ...........A.CT.............. CGACCTGGGCGGACGTCCTGGCCCGCTACTC 283 29 89.7 32 ...........ATC............... GCCTCGTGCACCGCGGAGTCGACCTCGTGCCG G [266] 221 29 93.1 32 ......................C..G... GCGACCGGCGGTGAGCCGCCGGAGCTGATCCG 160 28 93.1 0 ....-.....................A.. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 90.6 32 CTGCTCCCCGCTCGCGCGGGGATGGCCCC # Left flank : CCGCGCACGATGG # Right flank : CGCCGCGAACCCGATGTGGATCGAGGTCGTCGACCACCCCACGGCCCCCTCGGGCCCGGGGCGGCTGTTCCTGCCCCTGGGCCGCCGAGCGCGCCCGTTCTGGCCGGCCCCGGCCCTGCGGGGGTGGGGTGGG # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCTCGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //