Array 1 8827-8620 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBPN01000225.1 Pseudomonas cichorii strain ICMP 1649 PchICMP1649_Contig_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8826 28 100.0 32 ............................ ACCAACAAGCTCATCACATTCCGTGGCGAAAC 8766 28 100.0 32 ............................ CCATGCGCATCACAGAAACCACCGGCCAGCGC 8706 28 100.0 32 ............................ AGTGCCAGCGATCTTCACTCAGGGTGATCACG 8646 27 92.9 0 .....................-..A... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TGTAGAACCCGAAGGCATAAGGGTCTTTCATTATTATTCTTGTCCCCATCAGTCAAGTTGGTCAGAGCATCAACCGCTTAAATGATGGGGTTGAGGGTAGTTGAGAGTGGGGGTGTTTGCTGCTGAGAGAACCGAGGGAGGAGCGGATTTATCCGCGAGACGTCATTGAAGGCAATGCATTTTGTACGACGAAAGGCTCATCCCGCACAACCTTGTGGGAGGGGCCTTGGCCGCGACAGCTTCATACGGGATATGTCAGGAAATGGAGCTTTTCCGGGCTGTCATGTCGCTGGGGACAACATCAGAAAGCACTGCGATGTCCCACAGCTTGCGAATATCTATCCAGCGGCCAGAAATGAACCCTTTCTTGACCCTCTTTTTTCGCCTCAGATTCGTCCTTTAAAAATCAATGACTTACAAAGCACGATAAAAAAAGGGGTAAAACGGTTGCTGAGGCATATTTTTCTTTGAAAACGGAGAGTTATCGAGCAGAGTGTCTA # Right flank : AACTAAAGCCCTTGTAGTCCCACTTCACCTACAAAGGGCTTCAGTCCATTGCCAACAGAACATCAGAACCAGGGAACAGTAGCCGTAGCACTCAATCCATAGCTATTGAAGGTCCCTTCCTGGGCGCTGCTCTGTATCGGCTCATGCCGGATGAACAGCAGGAAGGTCTGGCCACTGGTACGGCTGCGCATCTGGACAAAGGGCAGGTTGCAGCGTTTTGCAGCGCTGTCGGGGATGCGTTCGCGGGCCTGTTCTTCGGTGAGGCCGTGGCGTTTGATCAGGCGTCGTCTTGTGCGCTCCGGGTTGCTGTCCACTTGCACGCGGCTGACGCGCCGATGTTGCGCATCAGTGGGCACCGGGCTCAGTTCGCCTACTCGCACATGGTCGCGCATGCCCGTCAGCCAGCTCTGGGCCATCAGGGCATCCAGCGCTTGTGCACTGCCATGCAGGCGCAGGCGGTCGCCCAGGCCGATAACCTTGCCGCCAATCGCGGGAAAGCT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 316-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBPN01000017.1 Pseudomonas cichorii strain ICMP 1649 PchICMP1649_Contig_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 315 28 100.0 32 ............................ TTCGTCATCAGGGTCACCGATGTGCACAACCT 255 28 100.0 32 ............................ ACAATACGGCGTTTCTCATTCACCGGAGCTGT 195 28 100.0 32 ............................ ATGGTGAAGCTCACCATGACCAAGGCTGGATT 135 28 100.0 32 ............................ GTTCGAAGCTCGCGTGCGCCGCATGACCCAGG 75 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GTTGGTCTGCCGAACGATTCAATCAAACTTTTCTGAGCTGCCTATACGGCAGTGAAGTAGACACTTTGCTAGATAACCTTCCGTTTTCAAAGAGAAATCCGCACCAGTAGCCGTTTTAACCCTTTTTTACCGAGTTTTATAAGTCATTGATTTTTAAAGAACGAATCTGCGGTGAAAAAAAGAGGGTCAAGAAAGGGTTCATTCCTGGCCCGTTTCTGTATGAGCAATGTCGCGGCCAAGGCCCCTCCTACAAGATGATGAACTGCCTTCGATACCGTGTCGGACTACTCCCGTAGGAGGGGGCTTGCCCGCGACAAGACACACAGCAGGTAATACTGATTCTCACAGGGCAGCCCCATTGCCGATCCTGACCCTCTTTTTTCACCCACCATGCACCCTTTTAAAATCAACCACTTACAGAACCGACGAAAAAGAGGGGTTGAACGACCGCAAGCGCATATTTTTCTTTGAAAACGAAAGGTTATCCAGCAAAGTGTCTA # Right flank : AAGAAGACGGAGCGTACAAAGACAAAATTCTGTCTTCACTGCCGTATA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 759-1448 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBPN01000017.1 Pseudomonas cichorii strain ICMP 1649 PchICMP1649_Contig_57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 759 28 100.0 32 ............................ AGTTTGATTGAATCGTTCGGCAGACCAACCTA 819 28 100.0 32 ............................ AGAACATCGGAGTTGATGCCGATTGTGATGTT 879 28 100.0 33 ............................ AGCAACAAAGCCCGCATCGAAGAGATTCAGCGC 940 28 100.0 32 ............................ GCGAAGGCGGCCCGGAAGCCTTCAAAGAGCGC 1000 28 100.0 32 ............................ TGTCGAGACGATCCAGCCGCTCGGCATCCTTG 1060 28 100.0 32 ............................ AGCATCACGCTGCTGTTTCTCTGCAAGCTCGC 1120 28 100.0 32 ............................ GTCGCCTGTGATTAATGCGATGGCATAATCGG 1180 28 100.0 33 ............................ TGACCGGCCTCACCCTGGAGTAAGAGGGAAACC 1241 28 96.4 32 ............G............... TGCTGAGCCAAGCCGTTTGCCGATTCAACAGC 1301 28 96.4 32 ............G............... GTCAGCTTCAGGCGTGTTGCCCAGGTTCGCAG 1361 28 96.4 32 ............G............... TCGATTTCTGATTCAAACCGGGCAACGTCATC 1421 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.8 32 CTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : TTGTGCACATCGGTGACCCTGATGACGAATTTCTGAGCTGCCTATACGGCAGTGAAGTAGACACTTTGCTGGATAACCTTTCGTTTTCAAAGAAAAATATGCGCTTGCGGTCGTTCAACCCCTCTTTTTCGTCGGTTCTGTAAGTGGTTGATTTTAAAAGGGTGCATGGTGGGTGAAAAAAGAGGGTCAGGATCGGCAATGGGGCTGCCCTGTGAGAATCAGTATTACCTGCTGTGTGTCTTGTCGCGGGCAAGCCCCCTCCTACGGGAGTAGTCCGACACGGTATCGAAGGCAGTTCATCATCTTGTAGGAGGGGCCTTGGCCGCGACATTGCTCATACAGAAACGGGCCAGGAATGAACCCTTTCTTGACCCTCTTTTTTTCACCGCAGATTCGTTCTTTAAAAATCAATGACTTATAAAACTCGGTAAAAAAGGGTTAAAACGGCTACTGGTGCGGATTTCTCTTTGAAAACGGAAGGTTATCTAGCAAAGTGTCTA # Right flank : AAGCTGATACCGCATTGCATTGTCGCGGGCAAGCCCCCTCCCACGAAAGTACATCCGATAGATATCTATCGCTTGAAGCACGTCTTCGCGACTGAAGTCGCCACACAAGCCAACTCATTCGCGAAATACATTCAAAGCCAACCCTGCACAAACCTTCTAGACTTCCCATCCCCCATGCGCGATAACACTCGTCCACATCCCCTTGTTTGCCCATAAGCCCGCCATGACTCAGAGCAACTGGATCAATCTTGCTCAGGACCGCGATACCGGTATCGAGACGCTGCATGCGCATTTCGAGGGGAATGCCCATGTCTATGATCCCCACTGGCATGACAGTTATCTGGTGGGTGTCACGGAGCAGGGGGTTCAGCAGTTTCATTGCCGGCAGCAACGTTATGCCAGCACGCCGGGTCAGGTATTCATGCTGGAGCCGGGGGAGATTCATGATGGGGATGCGCCCAGCGCCGAGGGTTTCACGTATCGGACGTTGTATCTCGATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6581-7328 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBPN01000045.1 Pseudomonas cichorii strain ICMP 1649 PchICMP1649_Contig_88, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6581 28 100.0 32 ............................ TTTGAAGCGCACTGGGATTCTGCCATGAGTAG 6641 28 100.0 32 ............................ ACCAACAAGCTCATCACATTCCGTGGCGAAAC 6701 28 100.0 32 ............................ GTTCTAGGGCGGAATAAAGTCTACTTTGTAAA 6761 28 100.0 32 ............................ TGGCCAACCGAGGCCATGCGGCGTCCTTTTAC 6821 28 100.0 32 ............................ AAGATCTAGCAATGTAAGGGACGTCCGCGTGC 6881 28 100.0 32 ............................ ATATGCGGCCACGACCCGCCCCACTTTCGCCT 6941 28 100.0 32 ............................ ATACGAATCGCCTTCGTGGCGCAAAGCAAAAA 7001 28 100.0 32 ............................ TACCGCTGTGGGTAACTCGAACATCACGTTCA 7061 28 100.0 32 ............................ TCTGGACGATCCAGAGATTTATAAGATGGTAA 7121 28 100.0 32 ............................ TTCAGTGAGTCGGTATCGAAGAAACTCAAACC 7181 28 100.0 32 ............................ ACCAGGTGATCATGGGTGCCCCGTCAGATGAC 7241 28 100.0 32 ............................ TGCGGTATCCCACGTATTCATGTCATAGAACT 7301 28 75.0 0 ............A.......TC..ACTC | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.1 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : GCCACGGAATTATAGATTACACCAATCTCCCTCGGACCACATAGCAAAACACTCAAGCGGTTGCAAAGCTCGTGGTGAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCTGGGTTTTGGTGATTGCCGGCCTGTAGGAGCGCGCTTGCCCGCGACGACTGTCGCCCTGCCAATGAAAATGCATTGCCTGTACGAACGTCGCGGGCAAGCGCGCTCCTACTTCAATCGCAGCTACCTGAGTAGAAGCGAATTCATTCGCGAAAACGGCATTCCAGACAATACATGTCCTTTGAATGTACCGGCCTATCGCGAATGAATTCGCATACAGGTCCGGCACCAAACCACGACTTCAAGCACCCTCTTTTTGACCCTCTTTTTTTCAGACTCCGTCATCCCTTTAAAATCAACAAGTTACGACTCCCTCAAAAAAGAGGGTAAAACGGCCCCAAGCAGGTGGTTTCTCTTTAAAAACGGAGAGTTATGAGGCAAGGTGTCTA # Right flank : CCACTTCATAACCGTCAAATCCTACATTCCCACTCACTCCCGCCCTACAACCACCGACTCCCCATTACCTCCCCCAAACTGAATCCCCTCATTTAACCCACGCAGTTCCCACGCTACCCTTCCCGTCATTCGCTGCCCCTTCAGCGACCGGGTTTGGCGACCTGGTTTAAAGATAAATTCCTCCCCATCGCAAAGCAGTCGATTTATTCTTCTGCGCAGTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGATTCCCCCTGTACATCCGCCTTCGAAGCCACCCTTTTCCTGCGCCACAGCCGCATGCTCCGCGCCATATTCACCGAATCCCAAGCCTGGTTCTGTCTCTCAGACCTTGCTCGCTTGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //