Array 1 302627-301133 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNHU01000002.1 Gleimia hominis strain UMB0859 ERR1203610.17957_1_22.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 302626 29 100.0 32 ............................. ACGCCGAACAGAAAAAATCCCACTCCAGCAGG 302565 29 96.6 32 ............................T GGCGGGCGACCCAACGCTCGCAGCTAGGTTGG 302504 29 96.6 32 ............................G CTTATTCCCCGCCCTCAAGTCCTTGAATTACT 302443 29 100.0 32 ............................. CGGCTCACCACCAACCCTGAGTTCTCCCCACG 302382 29 96.6 32 ............................G GCCTGGGTCACGGGGTTTTATCTGGCTTTTTG 302321 29 96.6 32 ............................A TCAGCTGTGAAACCACGCAAACCACGACCAGT 302260 29 100.0 32 ............................. TGGAAGTAATGGACTACTGGCAGCTATACGCA 302199 29 96.6 32 ............................T TCCCGTCGACGGTGAATCTGGTTTTGGAGGAC 302138 29 100.0 32 ............................. AACCGCCTATCGTCCTCCGATAGGTACAAGCC 302077 29 96.6 32 ............................T TGCTGTGCTAGTTTCGGGTCCCCCCATTTGAC 302016 29 100.0 32 ............................. ATGATCCGGCTTCTCGGAGACCCACTATGCGA 301955 29 100.0 32 ............................. TGACATCTCCCAGTCTCGCATTAGTCGCATTC 301894 29 93.1 32 .........G..................A ACCGCGCCCTGACCATTATCCCTATGATCAAA 301833 29 96.6 32 ............................G AATATCTGGGAACCGGGGTTTAGTAGCGCTCG 301772 29 100.0 32 ............................. ACGCTCACCGCGGAGCGCCTCACCGGCCACGT 301711 29 100.0 32 ............................. TGCCAACCCTACGTCGCGCCCTACCCTCGCAT 301650 29 100.0 32 ............................. CACGTTCCGCAAACATATGAACCACGTTCTTA 301589 29 100.0 32 ............................. CACATCTGTAACATCCACTACACATGCTGCAG 301528 29 100.0 32 ............................. CACCTACGCGAACGAGGGCCACTACAAAGGTA 301467 29 96.6 32 ............................G CTGTCAGGGGATATGCTGCAGGACTACGGAGC 301406 29 100.0 32 ............................. TGAACGAGAAAGCCACTCACGCCGCACAACAG 301345 29 100.0 32 ............................. AGGAGCCATGGGCAAATACCAAGCCGACCGCC 301284 29 96.6 32 ............................G CTGGGTCTGTGACTGCGTCTATGAGTCCTGAG 301223 29 100.0 33 ............................. CCCCGGCAATGGAGGTGACGCAGCAGGCGCATA 301161 29 93.1 0 ...........................TG | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGCTCCCCACGCATGTGGGGATGAGCCC # Left flank : GTGTTAACTGGGCGTGAGGCACAGCTTACGGATGTTACGAAACGTAACTTGCTTGAGGCTGGGTACCCACAGTTCGACCAGTTTGTTTTGAAGGCGAGTTCGTTGAAGGCTGAGTTACCGGATTGGGTGAGTTGCGCGCAGGACAAGTGCACAACTGTTGAGTACAAGTCTTCGGTGCGTAAGCACTTTGAGAATGACCTTGGCTACCGGGTGGTTGGTAACTTTGGGGATCAGTACTCGGATTTGAAGGGCGGCGCTTCTGACCGCGCCTACAAGGTACCGAACCCCGCGTACTACCTACCGTGATTAGTTAGTAGTTTCTTTTCCCATGAGGCACTGCGGTACTCGATGGACCGTGGTGCCTCATGTTTTACCTACCCTTCTCGTACGGTTTTTGAATATGCGATAATGAAGGCGGAGGGAAGTTGCTCACACCTTGTCTATCTCGCAGAAGTAACTGAAAATCACTAGGTGACAGGACATTTCTGCTGATCAACAAG # Right flank : AGAGGAGTTGAGAGAAAATGCTCAACGACATTACCAGAGTGTTTGAAACGATCGATACAGTGGTGATAGCGGCAACCGCCCTCGTCGAAGTTTTTAGACGCAACAGAGACGGGGACGATTAGCCAATCAGGTGAGGCCACCCACAAACAAGGGGGTCTCAGCTTCAACCATACACGAGGAGAAGAGTAGAATGAAACATTTCCGAGGAATCACGCTAACTGGATTGCTGATTGTGATGCTGCTGGTCCTGGACCTGCCTGTAGTGGTGGAGTTCCCACTCGCAGTACTGTCCCTGTGCTTAGCCGTGTACTGGCTGCGAGCGGCCTTGCGGGTCGCGCGATAGGGAGGGTGGAATGACCGTACAGTATTTAACCGTCGCAGATTTTGCGCACAGGTGCTCCCCACGCATGTGGGGATGAGCCCGACAACTACATCACCTACCCACTGCACGCCATGTGCTCCCCACGCATGTTCGGATGCTCTAAATGGGGTGTTTGTGA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCATGTGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCAGGTGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1159749-1161428 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNHU01000001.1 Gleimia hominis strain UMB0859 ERR1203610.17957_1_22.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1159749 29 100.0 32 ............................. CTCACAGGCCGAGTATGCGGTTGGGCTGGAGG 1159810 29 100.0 32 ............................. AACACCCACTACATGTAGTGGTAAGGGGGCAA 1159871 29 96.6 32 ............................G GCGTCGCATTCACCGACCGCGCGTCCCTAACC 1159932 29 100.0 32 ............................. TCACCTCAGGGAAAACCAAGCCAAAGGAGGCA 1159993 29 100.0 32 ............................. CAATCGGTACAATCACGTCATCTAAAGACACT 1160054 29 96.6 32 ............................G GGTTTGCGCGCACTACTAGAGGAAGCGGCGAA 1160115 29 96.6 32 ............................G CTCAGCCTCCAACACCTCGACGCCAAGCTCCC 1160176 29 100.0 32 ............................. CCGTATGCTACCCGACCCACTACACCTAGCGG 1160237 29 96.6 32 ............................T ATAAGCGGGTTTCACTAGCCGTAGGATGGGTT 1160298 29 82.8 36 ........................GATGA TCCGAAGATAATGACTGAAACAGTGAAAACAAACAT 1160363 29 100.0 32 ............................. CTCACCAACATCGTCCAAGGCATCGACCGATA 1160424 29 96.6 32 ....................A........ ACGGAGCAAGTTAATGTTAGCGAGCTCACCAC 1160485 29 96.6 32 ............................G TACCAGGCCGACCGACAGTGGTGGGCCGCACT 1160546 29 96.6 32 ............................T GGGGGCATCCGAGCGGTTGGAGTGTCTAGCGG 1160607 29 100.0 32 ............................. ACGCATCACAGCACCACCAATCGTGTTGTAGC 1160668 29 96.6 32 ............................T GCTGCGGGGTTTCCTCCTCCAGGCGGGATAGT 1160729 29 96.6 32 ............................G AGAATCCGGGTTTGGTGAAGCCTAACGGTAAG 1160790 29 96.6 32 ............................T GCCCCCTTGTGAGCTGGGACAATGCACATAGG 1160851 29 100.0 32 ............................. CGTCCGGGGTTACGAGTCCGACGGGCCGGTAT 1160912 29 96.6 32 ............................G AACGTGGTTTTGGAGGCGCGTGAGCTTGCGGG 1160973 29 96.6 32 ............................G TGTGGTTTCGGCCTGCCGTCCCACTCATAGGC 1161034 29 96.6 32 ............................G GGGCCTCCTCGGATAGTCAACGGGCAACTGCT 1161095 29 100.0 32 ............................. CAGCCTGCCTACACGCGTGAGGGAGGCTATAA 1161156 29 96.6 32 ............................T GAGGCCATACGACGGGCACGTGCACGCGGGTC 1161217 29 96.6 32 ............................T GGGTTGGGGCCCAATCGCCGGTAGCAGCCTAG 1161278 29 89.7 32 .........G......C...........G GCTGTTCGCTAGGTCTCGACCATCTATGTATT 1161339 29 100.0 32 ............................. GACTACAAGCGGGCACAAAACGCGTGTTTGAA 1161400 29 96.6 0 ..............C.............. | ========== ====== ====== ====== ============================= ==================================== ================== 28 29 97.1 32 GTGCTCCCCACGCATGTGGGGATGAGCCC # Left flank : ATGACGTTGGTGTTGACTGCTTGTCCGCAGGGTCTGCGGGGTGATTTGACGAAGTGGTTGATAGAGGTGAGCCCGGGTGTGTATGTGGGGCAGGTGTCTGCGCGGATTCGGGAGCTTTTGTGGGATCGGGTGTGTGAGCTTTGTAATGAAGGGAGGGTGGTGATGACGTATTCGGCGCCTGGTGAGCAGCGGCTGAAAGCTCGGGTGCATAATCAGGAATGGCAACCAGTGGATTTTGATGGTCTTACGTTGATTAAGCGGCCTTTTAAGAGGAAGGTGCAGGCAGGTCGGAAAACAGGTTGGAGTATTGCAAGCCGCATGGCCAGGGCACGTCAAGGGAAGTGGCGTGATGCGTACACGACTGTGGAAAAGAACTAGTATCAACTGCTACTGTTTGACTATAAGGCTGAGAGGCTCCAATGATTGATTCTTATCTTGTCTATCTCGCAGAAGTAACTAAAAACCACTAGGTCACCGGATATTTCTGCAGATCAGCAAGT # Right flank : CCTTTTGTATCACGCGTCCTGATTGTGCTATATTAAATGCTTAAGTGCTACCGATATGGCGACAGTCGGGTTTGCACTATTGCTAGACCGCCGGCTTTACCTAATCACACGCACGTGGGGTTCGGTAAAGCCGGTAACTAAAAATTTTGTGGTATGTAAATATGCTGCGTCGCCCGCCTCGGATCTAAATAACAGCCACTTCATCCCACACGGACACGCCGCATCACACCAAACACAGTGCGTGTACATACAGTTAGAGGCCGCTCGAAGCGGCCCCTAACTGTATCCCATCAACACAGTGCGAGTTTTCCCAGACTTAACAACCCAAGTCAGAAAACCCCCTTCCGGAAACAACAGGACTGAACACTAACACTTCCAGTAAATCCTGTAGGAAACTCTCGCGAGTTCCCCTGTCTCCGTGAAGTTGCTTTTAGTCTAAAACGGGTTCCTGTTAAAGAAGTTGGGTCTACCTAGGAATTACCTGGGAAATACTCACAGCG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCATGTGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCAGGTGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //