Array 1 1157065-1156840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXT010000001.1 Listeria innocua strain FSL L7-0304 NODE_1_length_1452276_cov_49.983819, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1157064 29 93.1 38 .........G.....T............. GAAGAAACAACAGATACCACATTTGTAAGTGCCAATTT 1156997 29 96.6 36 ...............T............. ATTCCTGACTTATTTAAAAGTAATACTTGTTGCATC 1156932 29 100.0 35 ............................. TTGATTTTTCGAATATCTCGTAATGTCTCACTTAT 1156868 29 82.8 0 ......A.......T.A.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 93.1 37 GTTTTAGTTACTTAACGTGAAATGTAAAT # Left flank : GGTGTACGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAAGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAACACCTGGAATCGACAGAAATTTGTAAGTGGCTGGGGGAAGATGTGCTTGGTGATATTTGCTTGGGAAAATCTTCCGGATAAGGGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATTGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTTCACCACCATCCATCAAATAAAAAAACGTGACTGCCAAACTCGCAGTCATGTTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATTGAACTTAGTTTTTCACTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTA # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAACGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 14654-15722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXT010000012.1 Listeria innocua strain FSL L7-0304 NODE_12_length_22960_cov_92.255255, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 14654 36 100.0 30 .................................... CGCTGGTTAGGTAATTTTTGATAAAGTGCA 14720 36 100.0 30 .................................... AAAATCTGAAAAAAATCAAAGATGCTATTG 14786 36 100.0 30 .................................... TTTTCTAATGGTGGAAGCGATTGATAGATT 14852 36 100.0 30 .................................... TAATACCCTCGCTCCTTCAGTACTTCTCGA 14918 36 100.0 30 .................................... AAATGGAATTGGTCTCTGATACCATCAGCT 14984 36 97.2 30 ..................C................. AAAGTATTTGCTTTTTGAATTAGCATCGTG 15050 36 97.2 30 ..................C................. TTTTACCTGTTCCTGTTGACCCAAAAATAA 15116 36 97.2 30 ..................C................. CGATGAAATTATTATTGATGTTAATAACAA 15182 36 91.7 35 ..................C..........A.....T GAAAAGAAGAGTTGGATGTTTCACTTGATGTTATT 15253 36 86.1 28 .......G...................A.GAC.... TACCTTTAAAGGCTTCGATGATTAAAGC G [15274] 15318 36 88.9 29 ........A......A.........A...G...... AGATTAACGTGTAGAAGAGCCCTAGCAAT 15383 36 91.7 28 .............................G....TT TTATTCAGCACCAGGATTAGAAAGGCAC T,TT [15397,15401] 15450 36 91.7 137 ..............C..........A...A...... AAAAAAGATGTTAGAAGAATGAAAGTTCGATTGATTTTAGAGCTAAGTTATTCTAACAGTACACCTATTTATAAGAACTGAGCTATGTAATTTTTATACTTAGCAAACTATGGTAAACCGTTATCTCTTAGGAAATG 15623 36 94.4 28 .........T....C..................... ACTAATTTGAAATCTATTGTGGAGTGTT 15687 36 83.3 0 ..............C..........A...GT..GG. | ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 15 36 94.6 38 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTACGAGCTTCTGGAACATGAACTGGATTTAGAGGAAGATGAAATTACAGTTGTTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAGATAAAGGGATTTTCGCAGGTTATCTTAGATTCAGATTATTTTTTACAAGTGGAAAATGGAATGTAAGTATCCAAATGTTCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAGG # Right flank : CTAAAGCTTAGGAGATTATATGGACAAAACAATGAGCCTATAAAGTGTTTTTTAGTGAGCGGAAAATAAATATGTATCGCTTTTATACATACTCAAGAGATGAAATTAAAATATAGCATCAAAAATCATCCTGAGTAATAAGCCACTGTAGACTTTGGTTCCTTGTCATTACCTTTTAAAAAGTTTTTTCTTTGTCGTTTATCATCTACTTCTTCAAATTCTGCGTTTACTATGGCAAGTTAATGCAAGCACAAACGAGGATAGGCTAGAGCTTAGCTTAATTGTGATTCTAATTTCATTCAACAAGCATGATTAGTACATCAAAAACATGGGAGAGAAAAAACAACAGAAATCCTAGGAAATTTAAGTAGCGTATTGTTGATGGTTAGGTCTGTGTTAACTGGATTTAAGAGAAAGAAATATATTCGTAATGGATTAAGCAAAAAAATAGCCAATCTACTCTGAGTTAGTACAAGAATAGATTGGTTATTATAATAGGA # Questionable array : NO Score: 4.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.67, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : GTTTTAGAGCTATGTTATCTTGAATGCTACCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 806-441 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARXT010000009.1 Listeria innocua strain FSL L7-0304 NODE_9_length_29917_cov_83.077580, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 805 29 86.2 37 ....T............T.......T..G ACCAAGCTGACCACCCTAAGAATAAGTGATTCCAACG 739 29 100.0 37 ............................. ACAAATCTGACCAGTCTGGATCTGCGTAATAACCAGA 673 29 100.0 40 ............................. ACAAAGTTGACAACCACCCTGTATCTGGAGAATAATCAAA 604 29 93.1 37 ........G........T........... ACAAAGCTGCAGGCCTTGAATTTGAATAATAACCAGA 538 29 89.7 39 ....T..C.........T........... GCGGTTTAGTTGGCCGCCTGGATCTGGATGGTAACCAGA 469 29 86.2 0 ....T...........AT........A.. | ========== ====== ====== ====== ============================= ======================================== ================== 6 29 92.5 38 TAAGCGATATAAGTCCGCTAAGTGGATTA # Left flank : GCTCTGTGGAGCAGCATTATTTTTCACTGTCGTTTCGTCGCCAGGAATGCTTGTTTTAGCAGATGAAGTAAATTCTGGTGACTCAACAGAGGTAACGGCAGGAGAAGAGGTGCCTCCTCTTCCAGAAGGATCCAATGAAAATGAGGTGGAAGAGGCAACAGAGGAAGATGGAGTATCTTCACCTGAGACTGCAACTCCAAGCCAACAAGAAGAAAATACATCAAATACAACAGAGAATGTTGGTGGGGGAAAGAAGGAAAGACCAAAGCAAGGGAGAATCATCACGACACCAACAGCAATTAGTGATGTCTTTCCAGATAATGCTGTAGCCCAGACGATAAGGCAGATCTTAGGCGCAACAACTGTTAGTGACATGATAACTCAAAGTGACTTGGATAGTATCACTAGTGTTACTATCAGTTACTGGGGTGCAAGTAATCTTAGCGGAATGGAACATTTGACAAATCTGACAAATCTGTTTTTGAACGGGAACCCTACGC # Right flank : ACATTTTAGAGCTTTGAGCATCCGTAATAACCAAGTAAGTGATGTAAGTTCACTCAATACGAGTGTATGGTTTTTAGATGCGAGGGAGCAACAATTTACCTTAGAAAAAAAGTGGTCTAATTCACTAGAGATCCCGTTTGTAATAGGGGAGCTACCATGGTTATGGAATTCACGAGGAGGAGGACCTATAAATATAGATATCTCTGATGGTGGTGAAGCAATAAGTTCTGGTGCAAAATGGACTAGTTTGCCTAACGCTAGTCAAAATCTTACTTATAGTTGGGCCAATCAACGAGACACTACTGTTACCAATTATAGTTATTACTTTTCAGGAACTGTTACAGTGCGAGTGATTCCTGTCGAAGTAAAGATTCTAGTAGATAGTGATGGAGATAGTCAAACAACTGGAGATCAAACGTTATTAGCGGAAGAATCAGATGA # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAGCGATATAAGTCCGCTAAGTGGATTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //