Array 1 94704-93028 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZI01000010.1 Escherichia coli strain MOD1-EC6342 MOD1-EC6342_10_length_120233_cov_37.4984, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94703 29 100.0 32 ............................. ACATACTTTGCAGGCGATCGGCAGCTCTGGAA 94642 29 100.0 32 ............................. TTCAGGAAACCGGCGACAGCTCAGCTGATAAT 94581 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 94520 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 94459 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 94398 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 94337 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 94276 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 94215 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 94154 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 94093 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 94032 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 93971 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 93910 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 93849 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 93788 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 93727 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 93666 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 93605 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 93544 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 93483 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 93422 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 93361 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 93300 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 93239 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 93178 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 93117 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 93056 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1132-188 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLZI01000072.1 Escherichia coli strain MOD1-EC6342 MOD1-EC6342_72_length_2358_cov_28.1543, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1131 29 100.0 32 ............................. GGGACCGCCGTAGATGAAATTAAATCATTCAG 1070 29 100.0 32 ............................. CCCTTCTCTGACAGGTTTGCGGGCCTGTACCC 1009 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 948 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 887 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 826 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 765 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 704 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 643 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 582 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 521 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 460 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 399 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 338 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 277 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 216 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTCTTTATTGTTAGGGTCTTAAAGGGGTGAGGGTTGTTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //