Array 1 139425-137953 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUFJ01000017.1 Schleiferilactobacillus silagei JCM 19001 strain DSM 27022 285, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 139424 28 100.0 33 ............................ CGTCTACTGGAATCGATTCGATTGAAGCAGACC 139363 28 100.0 33 ............................ CATGCACATCTCAGGTGGTTCAGTATCCGACCA 139302 28 100.0 33 ............................ TGGCGTTTGGCGCGTTTAGTACCAATGCCCAAG 139241 28 100.0 33 ............................ CTGAATCTCACTAAGCCTAGTAGATCAGAAACA 139180 28 100.0 33 ............................ CTCCACGTCCGTTATTAACGTCTGTTACACTAA 139119 28 100.0 33 ............................ TTTCACGTCCGGCTTAGCCTTAGATGATACCGT 139058 28 100.0 33 ............................ CATATCCAATTTTAATTTTCGACTCAAATTGTA 138997 28 100.0 33 ............................ CACCGGGGAAGCATAAAAACTTTTATGGCCCGG 138936 28 100.0 33 ............................ TCACAAAATTGATTTAATTAACTCGCTTTCAGT 138875 28 100.0 33 ............................ CACGTGGAGCCTGATTCACTAGATGAATTTTTT 138814 28 100.0 33 ............................ CGAATCCGAAACAACTAGATACATGAAAGAAAA 138753 28 100.0 33 ............................ TCAACACGAAACAGGGCGAATTTAAGATTTCTA 138692 28 100.0 33 ............................ TAGAGAGCATCTTTACCTAAATCGGTCAGTTTC 138631 28 100.0 33 ............................ TACCACTATCGAAAAAATTAAAGTTTCAGTTAC 138570 28 100.0 33 ............................ TGCCTTGCAAAAACACTATTGAAAGATGAAATA 138509 28 100.0 33 ............................ TGGGACACGTGAATACCCGAATAGCCTTGATGA 138448 28 100.0 33 ............................ TGCACTTGTAAGCAAGCGCACGGGTTGGAGCGT 138387 28 100.0 33 ............................ CGCACTATTTCGGTTAAGTGACGACTATGAAGA 138326 28 100.0 33 ............................ CAAACTTTACGTTTTTGCTCAAATTTAAAGTAC 138265 28 71.4 13 ...............A.AA.T.AC.G.G TTATAGACTTATT Deletion [138225] 138224 28 100.0 33 ............................ TAATTTGTACTCGACTTTTAATTTTAAACGACA 138163 28 100.0 33 ............................ TTAAAAATGATTGATACTATGGAAAAAGTCGAA 138102 28 100.0 33 ............................ TCTAAGATCAGAATAAATCTTAGGTTGGCTTTT 138041 28 96.4 33 .......................A.... CGTTGATCAAACACCCAAGATGGTCAACAATCC 137980 28 89.3 0 .........A......T.........T. | ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.3 32 GTATTCCCCGCGTATGCGGGGGTGATCC # Left flank : GTGAAGAATCAAATTATTTCTATTGCTGCTTTTAAAAGTATTGGGATAAAAGAATGTCAGCATTTTGATGCCTATATTAGTATTGATCAACCAGTTCCTGAAAACATTGTTAAATTGACGGGGATTACGGATTCAAAATTAAAGGATGAAGGCATTGAATTAGTTGATGCACTAAGAAGCCTGAAAAAATTTGTTGGGAATTTACCAATTGTTGGTTACAATTTAGAGTTTGATGATAAATTTATTTCACTGGGATTTAAAAAATACAATCAAAGTGGAATAGATAATAAGATGATTGATTTAATGCCCTTAGTGAAAAAAGCAAATCGGTTTTTGGATAATTTTAGATTAAATACAGTTTTGAAAAAGTATGACATTTCTAATGAGCATCCACATGAGGCATATGCAGATGCACAAGCAACCTTGGCCCTTGCAGAAAAACTCATAAAAAATGGTGATTTAGTAATTTAAGAATGTTGATTTATAGGGATTTATTTAGT # Right flank : TATTAAAGAACGTGCCTAACTACGTATTTCCGATTATTTTCCACTGCCTTTAATATCCATTTAAAGCGACATATTACTTATGTGTTTCCAGTATAGAAAATTTCGTGTTCCCCATACAAACGGGAGTAATCTTGTTCAGATGAGTCGGATGAGCAACAAATCTGTTATTCTCCGCGTTTTTACCTAGTTATTAAGACGGCACGGATTATATTTTTTATAAATATAAGATTTTTTCGAAATAAGGTTAATAAACGGATTCCAGGACTGAAAGAGGTGACTTAATGATAAACGATAATCAATTTCAAATTTCTTTAAATGAAAAATTGTTGATAAGTATACAAAGCTATCAAAAAAAGCTTCAGTTAACGAATCATGCTATCCTAAACATTATTAGTTATGAACCCACAAGAGAGAATCAATTTTTCGCTGGGGAGGCTAGTCATACTAGCTATGTAAAAGCCGCATACGTCTTAGATTCAATTTTTCAATTTTTAAAACAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 151955-150462 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUFJ01000017.1 Schleiferilactobacillus silagei JCM 19001 strain DSM 27022 285, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 151954 28 100.0 33 ............................ TAACAGTAGTTTTACATGCAGGGGTATTATTAA 151893 28 100.0 33 ............................ CATGAGCCGGTTTGCTACGGTCTACGCCGTGGA 151832 28 100.0 33 ............................ CACGACAACCAGACGAATAACTGCACCCGAACT 151771 28 100.0 33 ............................ CAAAATTGTCACGCTGCTAAAAGATGAAACCAT 151710 28 100.0 33 ............................ CTAAACTGCCAGGCGCTATGCTTTCCCGCGGGC 151649 28 100.0 33 ............................ CTTGCGTGGTGGTTATCGTTGGGTCAGCCAGTG 151588 28 100.0 33 ............................ CGGCGCTGGGACGATTGGGTAGTCTTACTCGAA 151527 28 100.0 33 ............................ CCGTTTTTAACTTGGTTGAGGTCTATTGCTGTG 151466 28 100.0 33 ............................ CTACTACGAAGACTGGGAGTATGCCCTGTTAGC 151405 28 100.0 33 ............................ CTTGATTTGATGTTGAGCGACTTTTCCGTTCAG 151344 28 100.0 33 ............................ CTCAAACCGGTATCATCGGCATACTCAAGGTAG 151283 28 100.0 33 ............................ TGAAGTGAGACTAAAATAGAAAGTGAGATCTTG 151222 28 100.0 33 ............................ TGTAAAACGAAACAAAGCGGCTGTAAAAAGCGC 151161 28 100.0 33 ............................ CATTTGGGCTAAAGCAGTCCATCTGAATTGTCC 151100 28 100.0 33 ............................ CACAGCCCATATGCTCACCAGCAACGCCCATCC 151039 28 100.0 33 ............................ TGAATTTATAAGTAATGAAAGTGACGGGGCTTA 150978 28 100.0 33 ............................ TCGCCTACAAGCTCACCGGATGCCAAATTGTAC 150917 28 100.0 33 ............................ CTTGTCAATTTCCTTTTGCATTTGTTTGACCGT 150856 28 100.0 33 ............................ TTCTTACGCGATGGCCGAAAGCCAAACTCATGA 150795 28 100.0 33 ............................ CAAGGGACAAGAGTACGCGACTTTCACAGAGAC 150734 28 100.0 33 ............................ CGATCAGGATGTGCCGATCACTACGGTTGATAA 150673 28 100.0 33 ............................ TAAGTAACGTTAGTAGCGCACATGATTGTAATG 150612 28 100.0 33 ............................ CGCCGGGAAGCCTTTAGACTTTTCCAAGGATGT 150551 28 100.0 33 ............................ TATTGGCGAGGGCAGAACCATGAACCTTTACAA GC [150532] 150488 27 82.1 0 ..............-..A...T....TT | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.3 33 GTATTCCCCGCGTATGCGGGGGTGATCC # Left flank : TGCCAGCAAAACGTAACGCGGAGATTCAGCAACCGGATGAACCGATTGATTTTATTACATTATTAGAGGTTAGGGCCGATGAGCTAGAAACTTTCATCGAGGACTGGAAACGACGATCGGTGATTATGGAAAAGGCGGATGGCTTCATTTCGGATACCTTGGAAAAATCTCAACTTAGTGACAGCGCCTACCAGATCATTAATATTTCCCACTGGTCGTCTTACAATAAGTGGTTAGCAGCTACGAATAATCCAACGTACGCTGCTCAACTGGCGGCTGACCATAGTCGGGCAACACACGTAAAAGTTACGCGCGGTTTTTATCGGCCGGTAGCGGGCGGGATGCATTTTTATGATTAGGAAAGATGGCGTAGGTGAGAGCAAATCCTAGAGATGGGGATGCTCTTTTGTTTTAGGATTAACATTTAATTAAAACTAAAAAGTGATGGAAAACGAAGAAAATATCATGTAAGATTGTTGTAGTGACGGGATTTGTTTAGT # Right flank : CTTTAGTACACTATGTACTTATTCAGAATTAATGTATTTCTTGCATATTTAGGGGCGATATTCCATACATAGTATTATAATAAGAAAATAACCGAGAAGATGAAACGATTAAGGGCTTTTCAAATGATAAAAAGATTTGTGAAAAGTAGATTTGTATAATCTGTTTTACAACTACGTTTACAACGCTTTGAAAACATAAAAAAGAATTTGATCATTTTGTTGTATGTTTTACCAAGTGCTTGATTATGACCGCATAGGTATGGGTCACTGTATGTATTATAGGTTGAAAGAATTAAGTAGTTGGATAATTAGCTAACAGTCGGAATGTAAGAAAACTTATGAGTATCTTGTGTTTTAAGCGAGTGGTAATGTTCACGATAGTCTATGTTATCAGCACCGTTTACTGTTGGAGATACACCTTTTTATTACTGCTATTAGCTATAATGGGGTTATTTTGTTTGTTCGTGGGCAACTGATGGATTATGGGAACCAAAGGAGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 170957-169137 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUFJ01000017.1 Schleiferilactobacillus silagei JCM 19001 strain DSM 27022 285, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 170956 36 100.0 30 .................................... CCACCGCATAGTCCACAGCGCATTAGACCA 170890 36 100.0 30 .................................... AAAATGATAAGGAGAACAACAATGAAACTA 170824 36 100.0 30 .................................... TTACATACATATAAATTGAACGATAAGTCC 170758 36 100.0 30 .................................... TAGCGATATTGAGGGGTGGTTAAGTTGACG 170692 36 100.0 30 .................................... TTTGTCATACGCTATAAACGCATTCAGCGC 170626 36 100.0 30 .................................... CGGCGTGACCCTAACACCGGTAAAGCGCTT 170560 36 100.0 30 .................................... AACCAACTACGAAATGATCTTTTTGCGATT 170494 36 100.0 30 .................................... TTGAAAAACTATCAATATTGTTTACAACAG 170428 36 100.0 30 .................................... CGGAACACTACTTAGAATTAATGAATGAGG 170362 36 100.0 30 .................................... TTAATTTTTACACCAGCATTAACAGAGCGC 170296 36 100.0 30 .................................... TCTTGATTGGCATTTCTAACGCCTCCTGTA 170230 36 100.0 30 .................................... ACGATCAACTGGTTACATGGTACTGATTTT 170164 36 100.0 30 .................................... TGGCTGTTAGCCCTTGAACTTGACCTTAAG 170098 36 100.0 30 .................................... TGCCATTTTTGACGGCATTGCCCTGGACCT 170032 36 100.0 30 .................................... AATGACCTTTTCTTGAACCTGTGGAGTACC 169966 36 100.0 30 .................................... AGGCAGTGGCAGCGTTTCATCAAAAAATAT 169900 36 100.0 30 .................................... ATTCCACAAGCATACTGGGACGGCTTAAAG 169834 36 100.0 30 .................................... ATTCTAGAAGATTTATATAACTATGCTTTA 169768 36 100.0 30 .................................... CTAAACAGGATGCACCTCAACCAGTTGAAA 169702 36 100.0 31 .................................... AATTAAGTAGTTTAATGACCTGCTCAGGTCA 169635 36 100.0 30 .................................... TGATCCCTTTTAGTGCGTATTGCAAATTAG 169569 36 100.0 30 .................................... CAGATCAACTTTAGGTATGGCAGCAATTGC 169503 36 100.0 30 .................................... CAGAGAAATTGCTCGGGCCTGTTCAACTGA 169437 36 100.0 30 .................................... ACTCATCAGGTTTTAGATCAGTTTGAAAAG 169371 36 100.0 30 .................................... AACAGCGCCAAGAGTTTAAGGGGCATTGAT 169305 36 100.0 30 .................................... TTACAATTGGCTGATGGTACCTATATCAGT 169239 36 94.4 31 ....................T...A........... TTTGGAGAAATGACACACGACCTATTTTTTT 169172 36 80.6 0 ......A.G....A..........A.A......G.T | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 99.1 30 GTTTTAGAAGTACGTTAAATCAATGAGGTTAAGAAC # Left flank : GAATGATTTAGATGCTTTGTTTAAATCCAAAGTGCAACGTAAGTTAACGACTTGGATAGATAACAATAGTAGAGAGGATTTGATTCAACTAACAAATCAAATGAATGATGTCATGACAGATGTTTTGTTTGGCATGGATCTACCGATTACAGTTTCCAAAGAATGGGATTTGTTAAAATGTCTTAAGTTTTTAGGAATTCAATTTACTGAGTTAGCTCGCAACAATCCATATGATATAATTGAAGCAATTTTAAAAATATCACATGATTTAAAAGATTCACAAGTAATTTGTTTAACCAATGTATTTCACTATCTTGACATGGAGCGGTTCTCCGAATTAGCCAATTTAGGGAAGACGTTTGGCTCAAAAATATTTCTAATTGATTTCTCAGAAACTAACCAGCGTGATAAATTTAAAGATTACTGCTATTACTTTATTGATGACGACTTAGTAGAATGGCATGATTGAGTAATTATTAAAATATTATGTTGAAAATACG # Right flank : ATCGATAACTTTATAACTTTTTTAAGCTATAAGCATAATTATATTTTAATGTAGGAGAGAAAAATGTTTCTATCAAGAATTAAAATAACCGACAAAAAGCTACAGCAAATCCAAGAGCATATCACCGTAGAGCCTTCTCACAACTGGGATAAACACGTTTTGCCCGGAGAACTGCAGCCGTCAGTTCCGCGGGAGCACTACTGGCAATTCGAACGGATGAACAAGCACTGGTATCTATATATGTTGAGCGAGGTTGCGCCAAAGGGTGCGAAGGTGGGACCAACTAGTATGGCAACTGGGTTAGCTTCTAAAGCAAACGAGCATTTACTAGATTCTTTACTAGCAGATCAACCCATCAGATTTCGGATTACCGCCAACCCACCGCGCACTGGTGAAAGTGATGAAAAATTAGATCCGCAGGTAATCGTTGCAGAGCAACGGGAATGGCTGCTTAATCAGCAAGCCCAAAATGGTTTCCAGATTCTGAGACAGATTTCGGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTACGTTAAATCAATGAGGTTAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //