Array 1 93507-92990 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOAB01000004.1 Escherichia coli strain MOD1-EC5871 MOD1-EC5871_4_length_214429_cov_29.3326, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93506 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 93445 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 93384 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 93323 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 93262 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 93201 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 93140 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 93079 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 93018 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120458-119209 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOAB01000004.1 Escherichia coli strain MOD1-EC5871 MOD1-EC5871_4_length_214429_cov_29.3326, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120457 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 120396 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 120335 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 120274 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 120213 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 120152 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 120091 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 120030 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 119969 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 119908 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 119847 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 119786 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 119725 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 119664 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 119603 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 119542 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 119481 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 119420 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 119359 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 119298 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 119237 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //