Array 1 166721-165299 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDD010000001.1 Salmonella enterica isolate 5423_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166720 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 166659 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 166598 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 166537 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 166476 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 166414 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 166353 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 166286 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 166225 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 166164 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 166103 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 166042 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165981 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165920 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165859 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 165798 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 165736 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165633 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 165572 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 165511 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165450 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165389 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 165328 29 96.6 0 A............................ | A [165301] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184895-182853 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDD010000001.1 Salmonella enterica isolate 5423_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184894 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 184833 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 184772 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 184711 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 184650 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 184589 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 184528 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 184467 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 184406 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 184345 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 184284 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 184223 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 184162 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 184101 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 184040 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183979 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183918 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183857 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183796 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183735 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183674 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183613 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 183552 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 183491 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 183430 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 183368 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 183307 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 183246 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 183185 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 183124 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 183063 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 183002 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182941 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182880 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //