Array 1 810518-814062 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024634.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain EPR9N chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 810518 37 100.0 35 ..................................... ACTGCTTATTCTTTATTTCGTCGTGCTAAAGTTCA 810590 37 100.0 35 ..................................... AGTACATCTTCATTATGAGAATCCGTTGAATCATA 810662 37 100.0 35 ..................................... TGTTCAGGAAAAGACTTTTTAAAACCATGACCATG 810734 37 100.0 34 ..................................... CTTGAGACTATTAATAGATCGATGCAAGCTGGTA 810805 37 100.0 34 ..................................... CCAATCCGCATATTAACGCCAGTCGTTAGACCCA 810876 37 100.0 34 ..................................... GTGGCCAGTGCGTTGGTTGTCGTCTTGAGCGTTC 810947 37 100.0 35 ..................................... CTTGATCCTTTGATGGATAATGTTCGTTTTTATAC 811019 37 100.0 35 ..................................... ACCTTATAATTCTTCTGATTTTGCTGTTTCTCTTA 811091 37 100.0 34 ..................................... CCGGGAGTATTGGAACGAAACTTACCTGTAACAA 811162 37 100.0 37 ..................................... TTTTCTATAAACCTAAAGGAAATCAGGGTTAGTAAGA 811236 37 100.0 34 ..................................... GTTCATTATTTATCTTTACAGCTATTGGGGGGAA 811307 37 100.0 34 ..................................... ACGGTGGTCAGCCTACGGCTGAGAATAGGTTTAA 811378 37 100.0 37 ..................................... ATGGCCTGCTTTCATCCATTGCAAGCTTTTCGCGTTC 811452 37 100.0 34 ..................................... CCAAGATATTCTGAACGCTGCAAACGAGCATCAG 811523 37 100.0 35 ..................................... TAATCGTAATATTACCATTTATCTGCTCAGTAAAT 811595 37 100.0 33 ..................................... TTAGAGTAGTTACTCCAGACTTATCTCCTTCAG 811665 37 100.0 35 ..................................... CTCTTATAACCGGCACAGATAGCCTAAGGATAATG 811737 37 100.0 34 ..................................... AACGAAACATAAAACACATCAATTTCATCATAAT 811808 37 100.0 34 ..................................... CCTTTCCTTCACTAACAGACTTTGATATTTTTCC 811879 37 100.0 33 ..................................... GTTGAAAATTTTTTAATAGGTCAATCTGGAAAA 811949 37 100.0 34 ..................................... CCAAAAATGGCTTGTGCAGCTGTGCCAAGATTCG 812020 37 100.0 35 ..................................... CCACGAGATTTACCTCTATAGGTAAATTTAGGTTT 812092 37 100.0 34 ..................................... AGGCCATCTCTCAAGCCCGACTGTACGGAAATGT 812163 37 100.0 37 ..................................... CTAGAAGCCGACGCAGTCGCAGTCGGCAAGTTGTCAA 812237 37 100.0 34 ..................................... CTGAAAGGGGTAGCACAGTTAGTTCTACTTGATA 812308 37 100.0 34 ..................................... AAAGTCTTTTAAAGGACTAAAAAGCTCGAGTCTT 812379 37 100.0 35 ..................................... AGGCTTTCCAACCTTAGATGAGGTTAAGGCTCACT 812451 37 100.0 35 ..................................... AACAATTGTTGTTACAGTCTTATCAATGCTTGCCT 812523 37 100.0 36 ..................................... GCAAGATCGGATGATTTAGACTGGTGCGTCACTGGG 812596 37 100.0 36 ..................................... CCTTCAGCGCTTTATTAAACTTCGCACTAGATGAAG 812669 37 100.0 35 ..................................... ATACCACCTTTAGCGGAGAGAATAGGATTAAGACC 812741 37 100.0 34 ..................................... CATGGGAATTCAATGTGAATGTACTTCTTTTTGT 812812 37 100.0 34 ..................................... CCTCAATATACCCCTTATTAATATTCTGATCCAC 812883 37 100.0 37 ..................................... ACTTAACCACAGTCTCGCCAATGTTGTCGCTTAATAC 812957 37 100.0 33 ..................................... AACTCATCTGCAACTATTAGAGTTGCAGTTACA 813027 37 100.0 36 ..................................... CCGGTTGATTACTCTTCAGAAGAAAAAAACAAACTA 813100 37 100.0 34 ..................................... CCTTCTCGGATGAACAAACAACCTCTACCATTTC 813171 37 100.0 35 ..................................... CCCTAACATTAAGAACACGATAGTCTTCGAGTACA 813243 37 100.0 35 ..................................... AGTCAACTATTAAGCAGACACTGTTATAACTCTAA 813315 37 100.0 33 ..................................... CGCTAGAGGCTTCAGGTTGTTTTTTCAGTTTAT 813385 37 100.0 33 ..................................... TTGGACAATTTACTTAAAGTGATTGCTCTATCT 813455 37 100.0 36 ..................................... TCATATCCGCATCAATCATTAATGCTAATCGTATGT 813528 37 100.0 34 ..................................... ACAACTAATATACAGATTGGGCAACTGGCTAGAG 813599 37 100.0 35 ..................................... TCATTTTCAAAACTTGAATTGCATCCAAAGTAATG 813671 37 100.0 34 ..................................... TAGGACGACGCAATTTAGAAGAACCACGCTTCTT 813742 37 100.0 35 ..................................... AGCCTCTTGATAAGCAAAAACATGATCATTAAAAC 813814 37 100.0 34 ..................................... TGGCCTCAAAAAGGTAATGCTGTTCCGCTTCCTG 813885 37 100.0 33 ..................................... CAAGAGGCTCAGCAAGACCGAACTCAACAAGAT 813955 37 97.3 34 ....T................................ GCGAGCTTAGTAGCCGAGAGAATTGGATTGAGAC 814026 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 50 37 99.9 35 CCAGCACATCATAACCTAAAAAACCAGCAACTGAAAC # Left flank : ATCTTGCAACTTACAGCTTATGGCATGTTATTACAAGAAAAATATGGCTTTCCTTGTCAAACAGGATTTATCTTATATGAGAACAAAGGCAAAACCCATCAGATAAATTTTGCTAAAGAGCGCATCCAACAAGTAATAACAATTAGAGATAAAATTTTATTTGATTTAGATAATTCTTATATGCCAGATAGCCCGGCAACACCGTCCCAATGCACACAATGCGAGTATTTAAACTATTGCAACGATCGATAAATGGTATAATATTTTCACTTAATTTAGACAATAAAAAACCCGACATGCAAAGCAGAAAGTCGAGTCAAAATTTATTTTAGATGATTTCAGTGCATCGCTATTTAGGTTATGATGTGCTGGCACTTAAAGTAAATATTATAACAATAAACTTCGCAGAATTTAACACTTTTTAATATTTTTATGAACTTCGTAAAAACATCAATTTTTCAACCTTTAAAATCCTTATTTAGTAAGGGTTTTAAGGCAGA # Right flank : CTCAATTAATGCTAGATTTTTATTTAAGTAACAATGAAGCGCTAATGTTGTCTTGTCTTGATGTTAAGTATTTAAAGATAATGGCTGAAACAAATGCACGCTCATTTAACACTTAGTGAAGACGGGCAATTTATTGGCACAGTAAATCAATTGACTGCTTTGCTTTAGTTCTGTATTTGCAACACGCTTATAACTTATGATAACAAGTGCCATACAAATCTACGGGAGCCGACCATTGGCTGTATGGCCCTTCTACTGTTTCTATGTAAGCCAAGCCTTCTACCACTCGTTGTACTCTGTAAGCGTTTACTTGATTGGAAGAACAACGATTGACTATAACATCGTGACGAACTAACCTCGTGTGGTATCTATTTAAAGAGTCAACAAGATCTGTGTCCTGAGTGAATGGCAAGTGTATTGGATGGTCGTGATCTCTGAGTCGTTGTTTACTGTAATGTGTGCCAATAACCCATATATTGCCTACTGGGCAACCTTTTGGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCACATCATAACCTAAAAAACCAGCAACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1922947-1922489 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024634.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain EPR9N chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1922946 37 94.6 33 ................C...................T CATCAAGCGGACGCAACTCAGCGACTTCCATCC 1922876 37 100.0 33 ..................................... TAACCGCCTCCAGATTCTTCTCCAGAGCAGTAG 1922806 37 97.3 33 A.................................... GCACCAGTCTCATCAGGTACAGAACACTCTGGA 1922736 37 100.0 35 ..................................... CACTTACTACTTCCTCACCACTTTGGCGGAAAATA 1922664 37 97.3 32 .................T................... TCAACATTCTTAGCCAAGTATTGTAAGGATGC 1922595 37 100.0 33 ..................................... TTTTCTACTTCGAACGATAGCGCTTGAAGGGCT 1922525 37 81.1 0 ......G.T.A............T..........GTG | ========== ====== ====== ====== ===================================== =================================== ================== 7 37 95.8 33 TGTGAGACCCGCCTATTCGAATACGGCAGTTGAAACA # Left flank : AAACAAACGCTTGCGTTACCTCGCCGAAGGGCAGTAAATAGTTTATCCATATTTACACGCTCTTTTAATCTATTGGATACCGTGTCACAGACTTCGGCTTTAAAAATCAAAGTGAGTTACTCGCCTTATGATTGAGTTGAGTTTACGAAACTTGGTCACAAGGCAAGTAACTGTCTTTACCCTTATAAAGAGATAGTTTTTCAACCTATTTAATAAACGATTAAGGTATTATTGCCTTAGTAGATAACACTGTATTGCTCAAAACAACCCTACTGTAATTGTTACCCAATTCGGCAAGCACGATAAAAAAATAGCAAGTTAAGTTATTTCATTAAAAATCAATCACTTAAGTTTTTCACTTGCCGAATGCTTTAACCACAACACTTTAACCAAATTAAAAAGGTATAATATACACAGTTTCACTAGATTTTCTAAAAAATCACCGAGGTTGCCGAATTCGCCTTGTATTTCGTTGATTTATAAGGTGTTTTTTAGGGTAC # Right flank : TATTAATTCCCTATGTACTCTCATGCAAAACACAGAATGGTAAATGCTTAGTGGTACTTATAAAACAAGTGAGGGTATTGAGGTAATAAATTTTAAAATTTTAAACTTTTTTACTTGAGTAATTTGTTTAACTAAAAAAGCGATATTTAAGTGTGGCGAAACCTATGGAAAAATATACAAAATAGTTGCCTAGTGATTTAAATTGTATTTTCTACTAGGACTAGGTTGGGTTAACAAGTAAAATCACCAGTATAAAAATGCGCTTTATTGATTGAGAATTTATAAATGGTATAAATAGTTTTTTATCTATTTTCCACATTGCTAATGACTAACTGAATTCTCCTTAAATCATCAATATTCGTTTCAACATAACCTAAAGTTGTTTTAATGTCAGAATGACCAAGTAATTGCTGCAGTGATTTCAAATTACACCCACTATTGGCAATCTTTGTTGCCGTTGTGTGTCTAAATCTGTGGGGAGATACAAGTACGCCAATTTT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGAGACCCGCCTATTCGAATACGGCAGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 1925460-1925077 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024634.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain EPR9N chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 1925459 35 100.0 34 ................................... TTCTAAAACATCCGCATCGCCAGTGCCTTCTTTG 1925390 35 100.0 35 ................................... CCTTCACAGTCTGGTTACCCACCGCACTAGCCGTA 1925320 35 100.0 37 ................................... GTATTGCGACCCTCACCTGATATGAACATGTGCTTAA 1925248 35 97.1 32 .........A......................... ACAACCCCTAAGGTTGCCAGTCCTGATACTCC 1925181 35 100.0 35 ................................... CTTTAGTATGCCTAAGCCACGACCTATCTTGTTCT 1925111 35 94.3 0 ..........................G.......T | ========== ====== ====== ====== =================================== ===================================== ================== 6 35 98.6 35 GTGAGACCCGCCTATTCGAATACGGCAGTTGAAAC # Left flank : AATTTGCAAATAATAGGGCATTAAAATGACAAAAGAGAAAAAAACCGTTGGCACCAACTCAATGACAAAGCACTCAAAGGAATTGAGAAAAAAAACCTCAGCAGAATGGACTAAAAAACACATTATAAGCAAAGCAATCAAGTTTAATAAATCTCAAGAGAGTGATATAAAACTATTGTCTGATTTTGAATCAATTGAAGCGGGCTCAAACAAAGAAAGGTTGCAGTTGTTAGTTGATTGTTATTTGAAGCAATGATGCAAGTAAATATCGCTACAATTATTATCCAATTCGGCAAGCATGATAAAAAAATAGCAAGTTAAGTTATTTCGTTAAAAATCAATAACTTAAGTTTTTCGCTTGCCGAATGGCTTAACTACAACACTTTAATCAAATTAAAAAGGTATAATATACACAGTTTCGCTATATTTTCTAAAAAATCACCGAGGTTGCCGAATTCGCTATGTATTTCGTTGATTTATAAGGTGTTTTTTAGGGCACT # Right flank : ATCCCCCACCCATTCCCACGCAAAACATGGGGTGGCAAACACTTGGTAGTATTTATGAAGCGAGCAAGATTTAATGGGTTAAATTTTGTGCATCTTAAAGAAAGCTTATTAATTCCGATATTGCCTTTTAAAAAAACAGGTGGTTGCCTTTACCTTGTTTCAGTTATTGCCAATTAAAAAAAAGCCTCTTTTAATCGAGGCTTTTATAAAAATATTATAACTTTACTTTAAGATATAAACTATTAAAAACTATTCAGCCCCCAAGTCTTTTTATAGCAATGTTAAAATAATTACTGTCTAATTCGTAACCCAGATAATCAAATATTTGTGATTTGATGCAAGCCATTGCGGTAGATCCACTACCCATAAAAGGGTCTAGAACAGTTCCCCCAGTTGGGCAAAATGCTTTTATAAGTTTTAGCAATAAGTCAACTGGTTTTTGTGTTGGATGAAATTTATTACCTGTATAGTTCCAACCCATGACACTGGGTAAGACTTCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGACCCGCCTATTCGAATACGGCAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 2018550-2018211 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024634.1 Bathymodiolus thermophilus thioautotrophic gill symbiont strain EPR9N chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ==================================== ================== 2018549 39 92.3 36 ..................G.....G.....A........ ACTAATATGCAAAGCATGTTTAATGGCGCACACATC 2018474 39 87.2 36 .........G...................CAC...A... TCTGATATGACTGATATGTTTCGTTCTGCATATAAC 2018399 39 100.0 36 ....................................... ACCGATATGAAACACATGTTTAATGGTGCAGTCGCT 2018324 39 100.0 36 ....................................... ACTAATATGCAAAACATGTTTAAGGAAACGGCATTC 2018249 39 94.9 0 ...........C.......................G... | ========== ====== ====== ====== ======================================= ==================================== ================== 5 39 94.9 36 TTTAACCAAAATATTGGCAGTTGGAATGTTGGTAATGTG # Left flank : CAGAGGACGACATTTACACAGTAAAAGTAAGGCAAACAGATGGAGTAGGAAATGTTTCCGATGAGCAAACCATTGCCTTCACGCTAAACACCAGCACACCAACTCTTGCGATTACAGGTAGTGGTGGTGAAGATACCAGAACAATCACATTTAATTTTAGTGAAGCCATTCAAGATGGGTCGTTTACCACAGATGATATTGGCATTGAAAATGGTACTCTTAATGCGGTCTCACTTACCAAAGTAAGTGCAAGCCAATATACTGCTGTGGCGTTAGCAAGCTTAGGTGGACTGCATGCTAATGTTGCTATCACAGTTGCAGCAAATACCTTTGTAGATCTTGCTGGCAATGCCAATACTGCCATCGCTAAAAATATAACCACGCTTTACAGTTTACAAAGGTATATTGATGTTGATGGTAATGGCTCTGATGTTGATTTAACCAATTGGGATGTGTCCCATGCAAATAGCGCATTTCAAGCATTTTTTAACGCAAAGAAA # Right flank : GTTAATATGGAGGGCATGTTTCGGAGCGCAACAGGCTTCAATCAAGATGTTGGCAGTTGGGACATTTCGAGTTTAACAAATGCAGAGCGTATGTTTACTGGCATCTCAGTGGCTTCCACCAATATGGATATCGCCAATATGGATAATACCTTGCGTGGTTGGGCAAAACTTGATACCGCTGCAGGAGAGACTACTATTCAGCGTGATGTTAAGTGGAGTATCGCAAACTATACTGATGCTACTGCCAAACAATATTTAATAGACACCTATAACTGGGATATTGATGTTGGCATATTTGATGGCAGTAAAACGATACAGGGTAGCAATAGTGTTGATACACTCAACACAGATGCCAAACGGACGACGCTGCATGGCTTAGGGGGTGATGATACGCTGATAGGTGGCACTACAGATGATATCTTAATCGGTGGTGCAGGCAATGACCTTCTAGTCGGTGGCGGTGGTAGAGATGTCTTTTATTACGGTTTTAAAAATGCAGG # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAACCAAAATATTGGCAGTTGGAATGTTGGTAATGTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //