Array 1 48004-48886 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKKH010000081.1 Escherichia coli strain CJXMCRH920 H9_FDSW210082174-1r_1.clean_(paired)_contig_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48004 29 100.0 32 ............................. AGCACAAATATCATCGCTCAAACCACTTACGG 48065 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 48126 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 48187 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 48248 29 96.6 32 ..........T.................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 48309 29 100.0 32 ............................. GCGTCTCGAGCGCCGGACGATTCAAAACCAGC 48370 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 48431 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 48492 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 48553 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 48614 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 48675 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 48736 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 48797 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 48858 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 59508-59174 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKKH010000093.1 Escherichia coli strain CJXMCRH920 H9_FDSW210082174-1r_1.clean_(paired)_contig_93, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59507 29 100.0 32 ............................. GTCATCACGATGAATCAAAATTTCGCCCGGCT 59446 29 100.0 32 ............................. CTTCTCCACCGTTTGGCGAATCGGTGTGAGGG 59385 29 96.6 32 ................T............ ATTGTTATAATTATTTATTGAAATATCATTCC 59324 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 59263 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 59202 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAAGTTAGCGCTTATGGGGTTTTTCCCCACCGTTCAG # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //