Array 1 89602-88976 **** Predicted by CRISPRDetect 2.4 *** >NZ_QULC01000010.1 Clostridium sp. OM07-10AC OM07-10AC.Scaf10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 89601 32 87.5 33 ....A.A.AT...................... AGAGTAACCCATGCAGGTGAAGCAGGTTCTCTC A,CT [89589,89598] 89533 32 100.0 34 ................................ GATACTGGAACACTCGCAGTCCTCAAGGATAAGT 89467 32 100.0 34 ................................ GTATCCACTGTGAATATATTCCACGCCGTCATTT 89401 32 100.0 34 ................................ CCGGAAGAAAGCGTGAGAGATAGGATTGCTAAAG 89335 32 100.0 35 ................................ CGGCAAGCCTAACGTATAAAATTGCCGGGGTGGAT 89268 32 100.0 34 ................................ ATAGCAAGCAGGCCATTACCATCCCCGTGATGGC 89202 32 100.0 33 ................................ AGAAACACGGTCAAGGGCATATGCAGATGGTCT 89137 32 100.0 34 ................................ CAGAAACTTGTTGGTGAATTACCAGCTCTTGTAA 89071 32 100.0 34 ................................ AAAGATAATAAAATGTTTTTGAATCTCGTCGTAC 89005 30 87.5 0 ...............--..G.......A.... | ========== ====== ====== ====== ================================ =================================== ================== 10 32 97.5 34 GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Left flank : TGGATTTGAGGAGATCACATATCTTCTGTTGTTTGGTAATCTTCCGACTAAGAGTGAGTTAAAGGAGTTCAGCGGGATTCTGGCAAAGAACCGCAGACTCCCAACGAACTTTGTCCGTGACGTTATTATGAAGGCGCCAAGCCAGGATATTATGAATTCCCTGACAAAGAGTGTGCTGACCCTGTCTTCCTATGATGATAAGGTGTCAGATATCAGTCTGGAGAATGTATTGTCACAGTGCCTGATGCTGATCAGTGTATTCCCGATGCTTTCTGTATACGGTTATCATGCATATAATCATTATGAGAGAGATGAGAGTTTTTATATTCATCGTCCGGATGACAATCTTTCTGCGGCAGAGAATATTTTGAGAATGCTCCGTCCGGATAAAAAATATACGGATCTGGAGGCGAAGGTGCTTGATATGGCACTTGTACTTCACATGGAGCACGGCGGCGGTAATAATTCTACCTTTACAACCCGCGTCGTTACATCGGCAG # Right flank : GGACAAGAAAAGTATAAGGAATGTGTTATATTTTCTTGTTTCTATAAAATAGATTATTAAAAAAATAAGTTATATTTGAAATTATGAGTCCGTTTTATTGTACAATGAACATGTTATAGTATAATATATGTATTTATGATAAATTCTATTCAAAGGCAGGTGTTTCCCATGGCAAAATCCCCCAATCAAAAATTGAAACTCCTATATCTTATGAAGATTTTTCAAGAAAAGACGGATGACAATCATGGTCTCCGGGCTGTGGATCTGATGGAAGAGCTTCGCCAGTACGGTATAGAGGTAGAGAGAAAAAGTCTGTATTCAGATATAGAAGCATTGCAGATATTTGGATTGGACATTAATAAAATTCAAAAAAACCGGACATTTTATTATTATATGGGACAGCGGGAGCTGGAGTTTGCTGAGTTAAAACTTTTGGTGGATGCGGTACAGTCGTCAAAGTTTATTACGGTCAAAAAGTCGCGCCAGTTAATAAAAAAGCT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 652-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_QULC01000029.1 Clostridium sp. OM07-10AC OM07-10AC.Scaf29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 651 32 100.0 33 ................................ CTCCAGAAATAATCAATAAACTAGCAATGACGT 586 32 100.0 34 ................................ TTGTATTCAGTGATCAGCTTGATGGATGTTCCCT 520 32 100.0 36 ................................ TTTTATACAAGCCCCATATCCAGACGATTCGACTTT 452 32 100.0 33 ................................ AGTCAAAGCTACCGTTTCAGACCCATCATTTGC 387 32 100.0 32 ................................ TTTAACACCGACTTTTATCATTACTTAACACG 323 32 100.0 34 ................................ CAGATTGAGTCTCTCATAGATTATTATTCGGGAA 257 32 100.0 34 ................................ AATGTGCGATTATTATATAGGCAAGTATTGTATA 191 32 100.0 33 ................................ TCATTATAGGTATCCGCACGCAAGCCATAACGA 126 32 100.0 34 ................................ TTTTGTACAAGCCCCATATCAGACGATCGACTTT 60 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 100.0 34 GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Left flank : TATCCAGTTTTTTTATGGAAATGAGGTGGTGAAAATGTTAGTTTTGGTTACTTATGATGTAAATACGGAAACAACTGCAGGAAGAAACCGATTGCGGAAAGTTGCAAAAGAATGTTGCAATTATGGAAGACGTGTTCAGAATTCAGTATTTGAATGTATTATTGACGCGGGGCAAGCGGTATTGCTTAAAGAAAAACTAAAGTCGATAATAGATGAGAAAATTGACAGCTTAAGATTTTATTATATGGGAGAACGTTATCAAACAAAAGTCGAATATATTGGAGTGGATAGAGGGGTTGCTATGGATCAAACATTGATTTTATAGTATGGTGCGGATGGGAAGGGGACATATAAACATCGAGAGATTCGCACCAGAAAAATTCAATAATTTTATTTAAAAGAGCTTTAAATACCGAATTTATATAAAATAAAAAATGTATTATTGTGAAAAATGATGTGATATCTTGTCAAAAGATATTTTTTTTTTATACAATTATGCT # Right flank : TATCCCGCACCGGGTCTTACTGGGATAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 127-1216 **** Predicted by CRISPRDetect 2.4 *** >NZ_QULC01000090.1 Clostridium sp. OM07-10AC OM07-10AC.Scaf90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 127 32 100.0 36 ................................ GCCCAAGGTATGTGCCTTTGCTTGACCATTAAATGG C [133] 196 32 100.0 35 ................................ ATCGCTAGTGGTCTTAACAATGCCTATGTTTTAAC 263 32 100.0 34 ................................ TACAATAAAATGATTGGCAATAGTAGAATTATAT 329 32 100.0 34 ................................ TCAAAACAGAAGATACCACGAATTGATAGATGCC 395 32 100.0 32 ................................ ATATTGATACTGTTGATAATGACGATGATTCC 459 32 100.0 34 ................................ ATCAAATAAAGAAAGGAACGCCCCTCCGGGACGT 525 32 100.0 34 ................................ AGTAATATCGCTACCACTAAACTTGACGCCATCC 591 32 100.0 34 ................................ ACCGCATCCGCTTCTTTCAACACCGACTTTTATC 657 32 100.0 34 ................................ CCGGATGAAACGGAGGTGTAATGCATGTATGACG 723 32 96.9 34 C............................... CCCTATGGGAGTGATCAAAAATAACACTCCGTAT 789 32 100.0 36 ................................ CACAATTTGGGGCGGTATTACTACATATCACCCCAG 857 32 100.0 35 ................................ AGCAGGGAACTGCCATCAAGCTGATAACTGAATAC 924 32 100.0 33 ................................ GACGATATAAGCGAACGATTTGACGGTCAATAC 989 32 100.0 33 ................................ TCTCGCTAAGTCCGGGGCTGATACGACTGCTAC 1054 32 100.0 34 ................................ AATCCCGCACTTTCCACAATCGTAGTCACCCGCT 1120 32 100.0 33 ................................ CAATGGGTAGGTTTATAAAAGTAAACCCAAAAG 1185 32 93.8 0 AG.............................. | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 99.5 34 GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Left flank : CAGCCTTTGCTCGATCACATAGGCCTCCTCATCTTCCAGAGAAAATCCTACGGCACCGTAAACAGCTCCGCCCTTTGTCAGAAGCTTTGTGATATTCACCCGATTTAAATGGATACGTTTTCCGTTG # Right flank : AGATCGAATCCTTGATAGACTACTATCTGGGGAAAAGTCGCTCCCCTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTTGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //