Array 1 454217-455709 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGD01000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain E53H1 NODE_1_length_634509_cov_15.9236, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 454217 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 454278 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454339 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454400 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454461 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454522 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454583 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454644 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454705 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454766 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454827 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 454888 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 454949 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 455010 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 455071 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 455132 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 455194 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 455255 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455316 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455377 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455438 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455499 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455560 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455621 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455682 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471841-473805 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBGD01000001.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain E53H1 NODE_1_length_634509_cov_15.9236, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 471841 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 471902 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 471963 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 472024 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 472085 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 472146 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 472207 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 472269 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472330 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472391 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472452 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472513 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472574 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472635 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472696 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472757 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472818 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472879 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 472940 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 473001 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 473062 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 473124 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 473227 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 473288 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473349 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473410 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473471 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473532 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473593 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473654 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473715 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473776 29 96.6 0 A............................ | A [473802] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //