Array 1 43011-44015 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVGW01000037.1 Escherichia coli strain 444_ECOL 1299_110540_3239346_442_,...,570_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43011 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 43072 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 43133 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 43194 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 43255 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 43316 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 43377 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 43438 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 43499 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 43560 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 43621 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 43682 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 43743 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 43804 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 43865 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 43926 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 43987 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69715-71146 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVGW01000037.1 Escherichia coli strain 444_ECOL 1299_110540_3239346_442_,...,570_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69715 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 69776 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 69837 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 69898 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 69959 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 70020 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 70081 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 70142 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 70203 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 70264 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 70325 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 70386 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 70447 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 70508 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 70569 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 70630 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 70691 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 70752 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 70813 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 70874 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 70935 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 70996 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 71057 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 71118 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //