Array 1 3125-1770 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAYF01000074.1 Chryseobacterium contaminans strain C-26 scaffold_165, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 3124 47 76.6 28 .GAA.A..G...A..T....T..........A.......A.....A. TATGCTATTAGAGAGTAATATGTTGCAG T [3118] 3048 47 89.4 30 ...A....G...G.......T..........A............... GATCCATCTCTAACTCCAGTTAAAACAGTA 2971 47 100.0 30 ............................................... ATAGGCTTTCCAGTTGGCGTATCGTTTATG 2894 47 95.7 30 .....................................C.......A. AGTATTCTGACCGCTATTGTTACCGTGCCA 2817 47 97.9 30 .....................................C......... AAGGTATCAATACAGAACGTAGGATTAAAG 2740 47 100.0 30 ............................................... GAAAGCCTATAACAAATTTCATCAAAGTGG 2663 47 100.0 30 ............................................... TATTGTAGGAGGCGTAGGCTCAGCGTCACC 2586 47 100.0 30 ............................................... TCCTATTTATATTACCTCTTATATCCATGA 2509 47 100.0 30 ............................................... TCCTATTTATATTACCTCTTATATCCATGA 2432 47 100.0 30 ............................................... ACTAAAGCGCCTTTGCATTATGCGCGTGTA 2355 47 100.0 30 ............................................... TTGCTCTTATCATCTGCTGTACTGGTGAAT 2278 47 100.0 30 ............................................... TAATACTCTACGCTTTACTCGCATGTCTTC 2201 47 100.0 30 ............................................... AAGCTGCGTTAACTTTTCATCGTTAAATGC 2124 47 100.0 30 ............................................... GTAGTGTTGATATAGCCACCGTAAACTCCA 2047 47 100.0 30 ............................................... TTGATAAAAATTAACAAATGAGTAGCCTGA 1970 47 100.0 30 ............................................... AACGGGCGCAAATCCATAATCACGAACGGT 1893 47 100.0 30 ............................................... ACCAGTTAGCATGATCGTACATATCCGTAT 1816 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 18 47 97.8 30 GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Left flank : ACATCGAAGAAATCAGGGTTTTTAAGGTGGGCTTCAAGATCTGCCGGTTTTTTATCTTTTTCAGTTACTGATGCAGGATCAACTTTAATAGAAGTCATATCAATATTGAAGTTTCCGGCTACTACCTGTCCACCTTCAATGCTTAAATCTCCTGATTTTACATTAAGAGTTCCCCAACGTGGAGCAAAACCTCCTTTGTGGAAAGCTTTCCAGTTTACTACAGAAGCTGCAGTATCTACTGCCAATACTTCTCCTTTGCTTTCAGCAACGGCCTGCTCAGTAGCTACTGACGTCTCTGTTTTTTCTTTATTGGTACATGATGCTGCCATCAATCCTACTGCTACTAATGCGATTACGCTAATTTTTTTCATATTATTGAACTGTTTAAAAAGTTTATTGTTTTCGGGTACAAAAATAGAAAAACCTTGCGGGAGTCACCTTAACATACATCAAGAAATGTAAATTTTGCTACCGATGTTAGGAATTGTAACATGGGAAGG # Right flank : CTCAAAAAACAATCCACTGAAAATCAGTAGATTGTTTTTGTTTTTAGGATTTTAAATTTAAAATAATTCAAGCTGTTGAAAAGTTGGAGGGGGTTCTTCTTTATTTCTAGCAAAGAATATTTCAATATCTCCGAACTGCTTGTCAGTGATACACATAATAGCAACTTTTCCTGCTTTAGGAAGCATAAACTTTACTCTTTTAATATGGACTTCAGCATTTTCACGACTTGGACAATGTCTTACATACATTGAAAACTGAAATAAGGTAAAGCCATCATCAAGCAAAAATTTACGAAAGCGGTTAGCATCTTTCATATTGGCTTTAGTCTCCGTTGGTAAATCATATAATACTAAAACCCACATAATTCGGTAAGCATTAAACCTTTCGGCATTCATATCAATTCAGGATAAGAGATCAATCGTTTTTCTCCTGTATAACATTTATACAGTGATGTAACTGTTGTTTTTACAGCAACCAACAATGGTCTGGTTTTATTATC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAAATTATTATCTTCGTGATTAGTCACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //