Array 1 16579-18167 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDD01000084.1 Providencia rettgeri strain GMW39_S1 31_contig_84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16579 28 100.0 32 ............................ TTTTTGAGCCTTACGCGCTTGCGGATGATCTT 16639 28 100.0 32 ............................ TAAATTTCGCTCCGTTGATTACTTATACAATT 16699 28 100.0 32 ............................ TGTGGAAAACGCCGGCTAAACATAAATAAGAT 16759 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 16820 28 100.0 32 ............................ GCCATGTTGGTGAGTATGAATAACCACACCAT 16880 28 100.0 32 ............................ TAAAGGGTGGTGGTCAGGCGACGACAACAAGT 16940 28 100.0 32 ............................ ATGCTTTACTACAAACTGGCTTGAAGCCTTGT 17000 28 100.0 32 ............................ GATATTTGCTCTGCATCATCCTGCTCGCTAAC 17060 28 100.0 32 ............................ ATAATCCCTTGCTGCATTCCAGACGGTCTATT 17120 28 96.4 32 ............G............... TGAGTAAGCAAATCATCACGATAATCATAGAA 17180 28 96.4 32 ............G............... TTGTTCAGATAGCGGAAGCAATCGGCATGAAT 17240 28 96.4 32 ............G............... GTAGGCATGTAAGCCGACATACATTTGCTTAA 17300 28 96.4 32 ............G............... AGTTCCGTCACATATTAAAGAAAGCAAATATA 17360 28 96.4 32 ............G............... TTTATAAAAATCAGATGTATACATTCTTGATG 17420 28 96.4 32 ............G............... TAATAAACGTACCGCGACGATGATCTTAGCGT 17480 28 100.0 32 ............................ ATCCTCAGAACTTGAGAAAAACACATTAACTA 17540 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 17600 28 100.0 32 ............................ ACTTGGTAACGCTCTGTTTTTCACTAACAAAT 17660 28 100.0 32 ............................ GTTATAGCGTACCGATGTGGTACCCCGACTAT 17720 28 100.0 32 ............................ ATACGCACTTGCAGTCTCGAAGTGATTACTAT 17780 28 100.0 32 ............................ GTCAATTTCATAGTTAAAAATATTTTTTCCGT 17840 28 100.0 32 ............................ CTACGGCAAAGATGAAGAGATGGAGCTGCAAG 17900 28 100.0 32 ............................ ATTGATATTGTAGGGACACAAAAAAAACTAGG 17960 28 100.0 32 ............................ ACATCCGGTGCCGGTAATAAACTTAAATCAAT 18020 28 100.0 32 ............................ TTGAATTTTCTTTCTCTGAAGCACTGATGCAA 18080 28 100.0 32 ............................ CTACCCACGCCACGCTATTTATGTGATTTAAC 18140 28 92.9 0 ......................A.A... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.9 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTATTTTGAGGTACCTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTGCTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 26805-27673 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDD01000084.1 Providencia rettgeri strain GMW39_S1 31_contig_84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 26805 28 100.0 32 ............................ TGAGACTACCCCCGTAGTACATGACGGGGGTT 26865 28 100.0 32 ............................ AAGAAAAAAAGATGAAGTTAGAGAGATTAGCT 26925 28 100.0 32 ............................ AAAACAAAATCAGGGGTCCGGGATTATCAACT 26985 28 100.0 32 ............................ ACTGTGAGCACGAAGCAAGTTATAGATAGCCA 27045 28 100.0 32 ............................ TGGTAATCGCTGAGGAGGAACAACCCCTTCGG 27105 28 100.0 32 ............................ GCACACTCTAAAGAGATAAAAACAATAAAGCC 27165 28 100.0 32 ............................ TTAACCCAATTAGTTCCCTGCATTAGATAGCC 27225 28 100.0 32 ............................ TTAACCCAATTAGTTCCCTGCATTAGATAGCC 27285 28 100.0 32 ............................ TATCGCTTCATCCTTGTGATAGTCTTCATTAC 27345 28 100.0 32 ............................ CGTAGGTAGGTGATCTCGATGCTCTAAATAAT 27405 28 100.0 32 ............................ ACGCTAAGATAGTGTCAGCGACAAAGGCCGGA 27465 28 100.0 32 ............................ TCAGAAATAGCAAAGAATCTCACGATTTCCGA 27525 28 100.0 33 ............................ ACATCATCGTTTACGATACTTGAATTTTTATTT 27586 28 100.0 32 ............................ GATAAAATCGGGGGGATTTGAAAAGAGCAGGG 27646 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAGGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAATCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : ATCTGATGCCTTTGGGGTTATCTTCAGAGTTAGTTCACTGCCGTATAGGCNNTCACTGCCGTATAGGCAGCTCAGAAAAGTGGATTAAAGAGCTTAATTTATCAACTTAAGTTTACTGCCATATAGGCAGTTTAGAGAAGAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATATGAGTTAAAACTAGTTTTTGTGTAATGAGTAGCCACACTGCTCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //