Array 1 24005-27086 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRAI01000007.1 Saccharophagus sp. K07 contig_0000007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24005 29 100.0 32 ............................. AATTGCCACATAAACATTTAACCCCATTCCCA 24066 29 100.0 32 ............................. TTTTCGCAATAATAAACGGAATCAAAAAAGAA 24127 29 100.0 32 ............................. GTTATCACACATGACAGTCGTCAACGTGAACG 24188 29 100.0 32 ............................. GGATTCCGGGTGGCATATGACGGCGTGCGCTC 24249 29 100.0 32 ............................. TTTCTGGTGAAGTTGCGCGACTGTGGATGATG 24310 29 100.0 32 ............................. CGCGGCGACTATCCAGTTCACGGCCGCCGAAT 24371 29 100.0 32 ............................. ATGGCTTGTCATAGCGGACATAGAGGGCACGA 24432 29 100.0 32 ............................. CGCGGCGACTATCCAGTTCACGGCCGCCGAAT 24493 29 100.0 32 ............................. CAAATTAGACTATATTGCAGATTTCAGAAAAG 24554 29 100.0 32 ............................. TATCATGCCGCTACGATGCGGCTGGCGGCGAT 24615 29 100.0 32 ............................. CTGCCTTCATGCTTAAACGGACGTTGGCTAGT 24676 29 100.0 32 ............................. GCTTCTAATGTTTTTCGACTGGCTTCGGATAT 24737 29 100.0 32 ............................. ACTGCCGTCACTACTGCTGCAATCACTTCTGC 24798 29 100.0 33 ............................. CCGAGTGCGGAAGGGGTGATTAGATGAACAAAT 24860 29 100.0 32 ............................. GATTTTGAACTAACCGAAAATTAAAATAAAAA 24921 29 100.0 32 ............................. GTTGCTCTCAGCGTTCGCCCGTGCCTTTAGAT 24982 29 100.0 32 ............................. CGTAGAGCTTTTTCCCCGCGATTCCACCACTA 25043 29 100.0 32 ............................. CGGTAGTACTTTCCGCTACAGTTTTAAAACAC 25104 29 100.0 32 ............................. GGGAATCGTTATGGAATATCAGCCACGGCGCG 25165 29 100.0 32 ............................. CGTATAAATTCCGCTAATTCTTTTTGATGAAT 25226 29 100.0 32 ............................. CAATACAAACGCGAACCGATAATGATTTTAAA 25287 29 100.0 32 ............................. ATATTGGAGATCCGTTTGCAGTAAAAACAGAT 25348 29 100.0 32 ............................. CTAGGTGTGGCATTGGTTCTTCAACGCGCTAT 25409 29 100.0 32 ............................. ACGCATTTTTTCTTGTTGCTGAATTCTTTGGC 25470 29 100.0 32 ............................. AACCCCGTTCTCTACGTTCCGACCAAAAATGC 25531 29 100.0 32 ............................. AGATTTGTGCCGCACTGCTGGGGGCGGTCGGC 25592 29 100.0 32 ............................. CGGATTTTCAGGGTTCCGATCCGTCACCGATT 25653 29 100.0 32 ............................. GCGCGTGACGCCAAACTCTGGACCGATGCCGA 25714 29 100.0 32 ............................. TTTTTTTGAATTTTCATAGTCTTTCTCCTATT 25775 29 100.0 32 ............................. CTCATGCGAGAGTATCCATAGTTGCCCACCAA 25836 29 100.0 32 ............................. TCCGTTCAAGTGAGACTGGGCTTTGTGAAGAT 25897 29 100.0 32 ............................. GATTGTTGAGCGCCTAAACTTACTCAATCAAA 25958 29 100.0 32 ............................. AGCTTCACGTAACTACCAATATATCAGTAGGT 26019 29 100.0 32 ............................. CTCCCTGAGCAGGACAAGAAGCGGTTTAAGCG 26080 29 100.0 33 ............................. TCGAGATCCTCGCCGTCAATATCCGGCCACTCC 26142 29 100.0 32 ............................. CCTTTGAGCTTGGTAAAAAATCCGCAATTGCC 26203 29 100.0 32 ............................. TTCTTCCAGCAGTTTTTAAAACGGTGTATGAG 26264 29 100.0 32 ............................. AATCAGGAATAGACATTATTGCAATAAAAAGC 26325 29 100.0 32 ............................. GCTGGTGGGAAGCCCGCAAGGCGGCCGGCGTA 26386 29 100.0 32 ............................. ATAAGGTGTGAATGCGTTCTGCCTGGGAATAT 26447 29 100.0 33 ............................. GCCATGACGTCGAGGAATTTGTCGGCGTGGTGC 26509 29 100.0 32 ............................. TTATGTCGCGCATGTTGCCCAAAAGCTAGGGC 26570 29 100.0 32 ............................. ATGTAACGATTTTCCTGATCTTTGGTCAGCTC 26631 29 100.0 32 ............................. ATCCTTCTCCTGATTTTTGTTCATCTAAAACC 26692 29 100.0 32 ............................. TAACTGTGTCCGGTTCCGTTTATGAAAAAAAT 26753 29 100.0 32 ............................. CATCATCGCGAAAAACAGAGGTGTACCACTGC 26814 29 100.0 32 ............................. TAAATTTGGTCTTTTAGTTTTAGATGAATGTG 26875 29 100.0 32 ............................. GACGGTTTAAATATCTAGTGTCTGTCGGCACA 26936 29 100.0 32 ............................. TAAACGCGCCGATTAATAACGTCGCTAACCAC 26997 29 100.0 32 ............................. AAAAACAAACACAAACTAATCGCTCTGCCTCT 27058 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.9 32 GTGTTCCCCGCGAATGCGGGGATTAACCG # Left flank : TTTGTTATCGCGTCTTATCCCTTTAATCGAAGAGGTGTTAGCAGCAGGTGAAATTCAGCCTCCACCGCCACCAGAAGACTCTCAACCCCCCGCCATTCCAGAGCCACCGAGCATCGGTGATAGTGGTCACAGGAGCGGTTGATCATGGCGATGTTGATGGTTGTAACAGAAGCCGTTCCTCCGCGTTTGCGGGGGCGCTTAGCGGTTTGGTTACTGGAAGTACGAGCGGGTGTATACATCGGAGATGTAAGCCGACGGGTCCGAGAAATGATCTGGGAGCAGATTAACGCGATGGCAGAGGGTGGAAACGTAGTAATGGCTTGGTCCACCAACACAGAATCAGGATTCGATTTTGTGACCTATGGCTCAAACCGGCGCGAACCAGTCGATATGGACGGCATGCGTCTAGTGAGCTTCAAACCTGATATTCCCGCTCCATAAATTCCCGTAGATTTTTTGTAACGAAAATTGCTCTTTAAAAACATACGTTTACAATTAGA # Right flank : GCTGTAACGTGAGGCTCAACCTATGCTGTTTCAAACAGTAAGCAAGTTTACGAGGTGTTGTTTATAAACAGACAAGCCGTGCAAATTAATAAAAAGCTAACTCACCCAGCAAAAAAATCTTATCGCTTAGGCTGTTTTTTGCGAGTTTCCTTTGGCTCTATTTGCTCCCACAACGCACAATCCCACTAACAATGCAATCAACCAAGCCACTGGATGTATGTGCTCGCGCAATAAAAATATTGCGGCGAGTAGGGTGAAGAAGGGTTGTAATAATTGTGTCATGGCGATTTTTTCCATTGGGCCTTTGGCCAGGGCGTGGTACCAGAGGAACATGCCGCCGGATTGGCTGATTAATGCTAAATAGGCGAGGGAGAGCCAGCCTATGGCGCTTAGGTTTTGCAATTGTGGTCGGTAGATATTGCCCAGTTCTCCAAAATTCATGCTGACGATAATTAAAAAGGTAATTGGCAGAGTTAAAAACACAGCCCAGCTCATTACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAATGCGGGGATTAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22264-21056 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRAI01000008.1 Saccharophagus sp. K07 contig_0000008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 22263 36 100.0 32 .................................... CGGGAGGTCGTGAACGCTAAGCTCACTACCGT 22195 36 100.0 35 .................................... CATTTCTCTTTCGAGATAAGAAGCACAGAAAGAAA 22124 36 100.0 33 .................................... GAACTAATTCATCTGTATTCCTCCTCCGTTCCA 22055 36 100.0 32 .................................... TCAAGATAATGCCCTCTGGGTGTTCGTAATGC 21987 36 100.0 33 .................................... GCGCAAGTTTCACGGATGGCATTACTGTTTCCT 21918 36 100.0 32 .................................... GACCTACGCCACTGAACACGTTTCGAATGTGC 21850 36 100.0 33 .................................... GTTTCGTCTTGCCAGACTTGTTCTGTTTCGAGG 21781 36 100.0 32 .................................... CTATTTTTGTTTTGCAACACAAAACGAATTAA 21713 36 100.0 31 .................................... GCTAAGACGGCCCGTCCGGCGGTTCGGCTGG 21646 36 100.0 35 .................................... AAATTTTGGATTTTGAATTTTTGGAAATAAACAAG 21575 36 100.0 35 .................................... ATCCTGAATTGTAATAAGCTTGCTGAGGCGGCGTT 21504 36 100.0 32 .................................... GGCTACGCTCGTGAGTGCCATCAAATGATCCC 21436 36 100.0 35 .................................... ATTTACCACAATTTTTAATTGGCGACCTGGAAGGT 21365 36 100.0 35 .................................... GACTAATCCGGGAATTGAGTCGCCGGTAAAGAGGA 21294 36 100.0 31 .................................... GGATCAACTTTACCACCGGGGAGGCCGATTC 21227 36 100.0 32 .................................... ATCATTTTCCTTAAAACCAACAACCTTTTTGC 21159 36 100.0 33 .................................... CTGCCTTTTGTCGCATTTATCAGCGCGCTACAG 21090 35 77.8 0 .................TCT..-........GCC.A | ========== ====== ====== ====== ==================================== =================================== ================== 18 36 98.8 33 GTTGGAAAAATGCCCTGATAAAGAAGGGATTAAGAC # Left flank : GGCGGATGGCTGGAGGAATATATCAATTCCCGCATCAACGAATTAAAAAGCGAAGGATTATTACAGGACAATTCTCATCTCAACCTTAAAATCGCATCACAAAATGCCACCAATGAAGTCGACGTTGCATTTATGGCCAATAACCGCCTGCACATAATCGAATGCAAAACCCGCCGACTAACGGGCCAGTTTGCCGGTAGCGCGGGCACCGAATCCCTCTATAAACTAGACTCTATTCGAGACCTCGGTGGCTTGGGAACAAAATCCATGCTGGTCAGCTACCGCCCCCTGGGAAATGCAGACGCCCAACGCGCACAAGACTTGCGCATCCGGGTTGTTCAAGGCGAAGGCATCCAGCGCATCAAGGAAACAATCCGCCGTTGGATTCTAGGAAACTGATACCCAAAACAATGTTTATGCACCGCAACTTTTTACATAGCAGAATTTTTGGGAACCACCTCCATAGCCATTTGATTATAAAGAGAAATTTTGATAGATCG # Right flank : ACTGGTATAAAACTTATCCTTTTATTCCTCTCTTACCATTACCTTGCCTTAATATTTTCCCCGACCATCAACCAAAATTTTTGCAAGCTTGCCAAAACTCCCCTGCCGTTATTTTTTCCACATAATGAGTCCAACCACATAACTGTTCTCTATAGGCAGGTTTTATGGACTATCTCGTTACACGTCATAAAGGCGCTCTGGAGTGGCTGCGGCAAAAGGTTGGCGCGGAGGCGGTGTATTTGCCGCATCTGGAAGATGTGCGGATGCTTAATCCTGGCGATACGGTTTATGGCACTCTGCCGGTTAACCGGATAGCCGAAATTTGCACCCTGCGCGCGCATTATTTTCATTTACTGGTTGATATTCCGGCGCATCTGCGAGGTAAAGAGCTAACAAGCGATCAGCTCGACCAATTGGGTGCAAGATTGGTGGAATTTATTGCACTGCGTCCAATATGCGATGAATCCATATTGAAACAGGCAGAAGAGCGCGAGTCGTTT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGAAAAATGCCCTGATAAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //