Array 1 196772-195277 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKJB01000002.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain 2010CEB2956SAL scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 196771 29 100.0 32 ............................. GTACGTCGAAGTATGCTGAATTACAGGAAGGC 196710 29 100.0 32 ............................. CCCGCCGTCTGTTTGCGGTTTTGAGCGCCCGA 196649 29 100.0 32 ............................. GCCGGTCGGCGGTATTACTCAATATTTATACG 196588 29 100.0 32 ............................. TTAGCAATAGGCTACGGCGATAAAACTTTTAA 196527 29 100.0 32 ............................. TTTCGAAATTCCTGCTCGATGTCGACCGCCGG 196466 29 100.0 32 ............................. GGATAAAGACGACGTTGAAGAAGCCGAACACG 196405 29 100.0 32 ............................. CTGCTGAGGGCGAATAACAAAATCATCAACCA 196344 29 100.0 32 ............................. CCTTGCTAGTGGGGAAGCGCTACGATTCACGA 196283 29 100.0 32 ............................. GTGAGCGCCGCCTTGGTACTGGCCTTTTGAGT 196222 29 100.0 32 ............................. GGTATGTTTCCGAAGACCTCGGCTGGCCTTTT 196161 29 96.6 33 ............T................ CAACGTTTCACTGTCGAGATAGCTATTGTCCGC 196099 29 100.0 32 ............................. GCAAACGAGTCTGTTTTGCAGACGTGTCTGGA 196038 29 100.0 32 ............................. CCCCGGCCTGATCTCGATCGGTGACGTAGGCA 195977 29 100.0 32 ............................. AATTTGAATGCACTGGTATTAACGACGAATAT 195916 29 100.0 32 ............................. CGCGGTCATACTTCAGGATCTGCTCTGTTGTT 195855 29 100.0 32 ............................. CCATTCTCGTTGTCGGTCATCTAGCGGTTGCG 195794 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 195733 29 100.0 32 ............................. TATCGAGCGTTGTTTCGGTGCGGGCCTGAGCT 195672 29 100.0 32 ............................. AGGGCTACCCGGTTGCGCGTATTGATGCCCCG 195611 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGAC 195550 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 195489 29 100.0 32 ............................. TTTGCCGCTGCTCGGTGAGGGAGCGTTTCATA 195428 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 195367 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 195306 29 96.6 0 ............T................ | A [195279] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 213299-212050 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKJB01000002.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain 2010CEB2956SAL scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 213298 29 100.0 32 ............................. ACGCTGGCCGAAAACGGATTTTCAATCCGCAT 213237 29 100.0 32 ............................. TATTCATCTGCTGCCGCCTGGTTTGTTTTATC 213176 29 100.0 32 ............................. GGATCGGCAAACTTGTTTTAACGCCGGACAAC 213115 29 100.0 32 ............................. CCCCTTCTGATCCCCTTTCAATTTCGCGCTTA 213054 29 100.0 32 ............................. TATGATCCGCCATAGAAACAAATACAAAAATG 212993 29 100.0 32 ............................. CTGTTTTGCAACCGCATCCCCGGATTCGGGAT 212932 29 100.0 32 ............................. TTGCCACAACCACAATGGATCAGGAGCAATTA 212871 29 100.0 32 ............................. AATTATCGAAAGGAGTTACTCAGGGGGGAGAC 212810 29 100.0 32 ............................. CAGCGGAAGCGATCAGTGGTCTCGATACGGAA 212749 29 96.6 32 ...................A......... GGCTCAGGTTGATGATTCTCATGAGACACAAT 212688 29 100.0 32 ............................. GGGTGATCATGACGATCCAGAGCATATTGCCC 212627 29 100.0 32 ............................. GATTGAGAGAAGGGCTTGCTTAGCTTCCTTCC 212566 29 96.6 32 ..................A.......... TGGGGCTGTAAGGTCCGTTTAATATCCACTCA 212505 29 100.0 32 ............................. TTCGTTAATTATATTACAATACAAATCATAAC 212444 29 96.6 33 ............................A GCCTTCCGGTACGTCGTCATTTTCAGTCAGCGG 212382 29 96.6 32 ............T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 212321 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 212260 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 212199 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 212138 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 212077 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACATGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //