Array 1 7518-9113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHYAD010000095.1 Pseudomonas aeruginosa strain CriePir286 NODE_95_length_19935_cov_323.226828, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7518 28 100.0 33 ............................ CTAGCGGGATTCCGAGGAGCTGGAGGATCCAAA 7579 28 100.0 32 ............................ TGAGCAACTCCTGGCGGACTGGATAACGACCC 7639 28 100.0 32 ............................ TGACCAAGGCCGCCCAAGTCCTGATCTTCGGC 7699 28 100.0 32 ............................ ATACCCCGTAGGGTACAGGACTGTCGAAAGAC 7759 28 100.0 32 ............................ TGGGTCAAGACCCACATGCCCGAACACAGGGG 7819 28 100.0 32 ............................ TAAGCGCCCCCTTGCGGGTTGGCTCAGGCCCT 7879 28 100.0 32 ............................ AAGAAACAGCGCCTGTTCGTCGACGAGTACCT 7939 28 100.0 32 ............................ ATGCGGGCGAGGGCGGTCTGGGAGAGCAGGCC 7999 28 100.0 32 ............................ ATTGTGGGTCGCCAGCTGCAGACGTTCACGAC 8059 28 100.0 32 ............................ AGTGGGAAGCCATGGTGGCAGAGTCTCAGAAA 8119 28 100.0 32 ............................ ATCAAGTCCGAACTGGGCAATGACGGGTTCAG 8179 28 100.0 32 ............................ GATCAGGCTAGCCATGACGGGCTCCATTACGC 8239 28 100.0 32 ............................ ATCATGACCCAGTTCAACATCATCACCAGCGA 8299 28 100.0 32 ............................ ATCAAGGGGCCGAGCGTGCCGCGCAGCCTGCT 8359 28 100.0 32 ............................ AGGAGTACATGCCGAGGGCGTCTGTGACCATA 8419 28 100.0 32 ............................ TCGGACTCAGGCGGACTTGCGCCAGGCCATGC 8479 28 100.0 32 ............................ TTTTCGACCGACGCGATGGCACAAGCAAACCT 8539 28 96.4 32 .............C.............. ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 8599 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 8659 28 100.0 32 ............................ AATTCACCTGCTGCGGCATTCCGAGCGACAAC 8719 28 100.0 32 ............................ AGTCCCTGGGCAAGCGCCTGATGCCCGGCGTA 8779 28 100.0 33 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 8840 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 8900 28 100.0 32 ............................ ATAAACTTCGGTTCCGTAGAGCGCTTCTCCGG 8960 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 9020 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ATAGGC [9032] 9086 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTAGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCATGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 18805-17637 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHYAD010000095.1 Pseudomonas aeruginosa strain CriePir286 NODE_95_length_19935_cov_323.226828, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 18804 28 100.0 32 ............................ TGGAGCACCATGTCATCGGCTTGGCTGATGCT 18744 28 100.0 32 ............................ TGACTCCTCGCAAGAGCCGCTTCTTTCTCCTC 18684 28 100.0 32 ............................ AGGAACGCCGCAACGACCAGGACCACGCATGC 18624 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 18564 28 100.0 32 ............................ GCAGTCCCAGCAACAGCAATCTAGGCCGTCTC 18504 28 100.0 32 ............................ TCCGAAAGGAGAAAGACGATCGCGAGGCGCGC 18444 28 100.0 32 ............................ TGACAGGCAGGAGGACAGAATGAGCAAGCATA 18384 28 100.0 32 ............................ ATGTAGAGCGACCTGAAACCACCCACTGGATG 18324 28 100.0 32 ............................ GCGTGACCTGTTGCATGTAGCACTGGCAGACC 18264 28 100.0 32 ............................ TATTCGCCACCAGTATCTGCCCTGCTTGCGGC 18204 28 100.0 32 ............................ AGCTTTCTCAGCCATTTCCGAGGCGCAAGATA 18144 28 100.0 32 ............................ ACGAGATTCTGTGAAACCACATTGGATATAAG 18084 28 100.0 32 ............................ GACAGCCTCTGTGGCGGCGTAGTAGCCGCCGA 18024 28 100.0 32 ............................ AGCGTGACCCGCTCTTCCTGGGCCTGCTTGAA 17964 28 100.0 32 ............................ AGGCGTTCTCTGTCGGGTTCGGTCTTGTCGCG 17904 28 100.0 32 ............................ AACCTGCGACGCTGAAGGCTTGGCATGGAGTC 17844 28 100.0 32 ............................ ATGCCCAGCCTGCCGAGGTTACGACCTTGAGC 17784 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 17724 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 17664 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4441-4774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHYAD010000099.1 Pseudomonas aeruginosa strain CriePir286 NODE_99_length_18633_cov_328.254674, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4441 29 100.0 32 ............................. GAGGAGTTGGAGGCCATGATCGGCGCCAAGTC 4502 29 100.0 32 ............................. TCGATGCGAGACTCCAGCCCGGTACGAGACAT 4563 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 4624 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 4685 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 4746 28 79.3 0 A..........A..C..-.....A....T | C [4750] ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.8 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGTTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGAGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATCGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13946-14706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHYAD010000099.1 Pseudomonas aeruginosa strain CriePir286 NODE_99_length_18633_cov_328.254674, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13946 29 100.0 32 ............................. GAAGGCGGCTGCGAGTTCTGGCGCTTCGACTA 14007 29 100.0 32 ............................. GGAGGGTATGTCTTCGAGCATCGACAAGTGAT 14068 29 100.0 32 ............................. CCCCTGGCCGGACGAAACCTTGTTGGCAAAGT 14129 29 100.0 32 ............................. TTGCAGACCCGCATGACCAGGGTGGCGGGAGC 14190 29 100.0 32 ............................. TCGGGCAGGCCGTCGTATCGTTCTTCGTGATC 14251 29 100.0 32 ............................. ATCGATGCGGCGAACGGGACAACTACGGTCAT 14312 29 100.0 32 ............................. GACGCGAAGGCTTGGGTAGATGGCTATCACGC 14373 29 96.6 32 ...........G................. TTGCGCTGGTAGCAGCCTGGAGAAAATACCCC 14434 29 96.6 32 ...........G................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 14495 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 14556 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 14617 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 14678 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //