Array 1 135-884 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZJ01000097.1 Pseudomonas aeruginosa strain HUM-294 NODE_68_length_13281_cov_24.3318_ID_135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 135 28 100.0 32 ............................ CAGAATGCGGCGCCGACCCAACTGTCGGACAT 195 28 100.0 32 ............................ TAGACGACCTGCTGGCGCTGACGCTGTTGGGC 255 28 100.0 32 ............................ AACGTCGCCGCATCGCCGTCCGCCCGGGCCTT 315 28 100.0 32 ............................ TGGTCGAAATTCTGGTACCTCGCCTGAAGCTG 375 28 100.0 32 ............................ TGGCGGTGATCGATGACCCTGCCACCATCCGA 435 28 100.0 32 ............................ TGATAGATCTTCGTGCGTCGCCACTTCTGAAC 495 28 100.0 32 ............................ TACCTCCTTGCCGGGCGCGGCGGCGAGTATGG 555 28 100.0 32 ............................ AGCAGCGGCTCCAGAAAGAGGGGCGCTGCCTG 615 28 100.0 32 ............................ AGGCTCAGCACAGCGTGCCGGAGGGGCTGGCC 675 28 100.0 33 ............................ AGGGGGGGGGGCGGCAGGCAGACTCACCAGCAG 736 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAAGCT 797 28 100.0 32 ............................ TTCGACGCCGCCAGGGTTGCCGCATCGCCGTC 857 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11237-9408 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZJ01000097.1 Pseudomonas aeruginosa strain HUM-294 NODE_68_length_13281_cov_24.3318_ID_135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11236 28 100.0 32 ............................ TCGAAGCGCAGATCAACGTTGTCTCCGTCGAT 11176 28 100.0 32 ............................ GCCGGTGGTAGGGTGGTGCCGGACGTCAAGTT 11116 28 100.0 32 ............................ GATGCGTACAAGAGTGCGTCGCTGTCCGACGT 11056 28 100.0 32 ............................ TCCCCGCCTTCTTTCGGCTCCGCAGGCCGGAT 10996 28 100.0 32 ............................ ATCAACCGCGAACTCGCGGCATTATCCGCGGC 10936 28 100.0 32 ............................ AGCCTAGAAGGGGGCTGGCGCGGTCCCTTCCC 10876 28 100.0 32 ............................ TGGCAGGAAGCCGTCATCTCCCCAACGACTTG 10816 28 100.0 32 ............................ TGGACGGGGCGGACCAGGTCCAGGCCGGCGGC 10756 28 100.0 32 ............................ TCAGCAGCAGGGAACCCGCGTGACCGTTGTGT 10696 28 100.0 32 ............................ ATCGGGCCAGCTCCTGCCGGCAACGCCGGCGC 10636 28 100.0 33 ............................ CCGGGAACGTTGGACAGTCCAGCCGACTCGCGG 10575 28 100.0 33 ............................ CCAGAACTGGCTGAAGCGCCGAGAGGCAGAGTT 10514 28 100.0 32 ............................ CTCTCGCGCTGGGCGCAGCAACGGTCGACAAG 10454 28 100.0 32 ............................ ATGCGGAGCAGGTAGCGCACCCACTCCTGCAA 10394 28 100.0 32 ............................ TGGGTGGCGTGCCTGCGCAGTGGCTTCAAGTC 10334 28 100.0 33 ............................ GAACTCTTCTCTGAATTCAAGGACGTCTTTCGT 10273 28 100.0 32 ............................ GTCTTCGAACGACCTGCGGTGTACTGCGGCAA 10213 28 100.0 32 ............................ CGTTGTTGCGTGCGTAGTTGCTGCCGTCGCTC 10153 28 100.0 32 ............................ TCGGGCGATCACTGTGCGCCGCCTGATCGAGG 10093 28 100.0 32 ............................ TTGTTGCGTTCGCGCTCGTCCAGCAGTTGGCT 10033 28 100.0 32 ............................ TGAGTGACAACGCCCAGGACGGCAGCCGATAC 9973 28 100.0 32 ............................ GGACACAACAATTACTCACGGCGTCTCTGAGC 9913 28 100.0 32 ............................ TGATCTGCGCGGATGCTTTCTCTTTCATCAGG 9853 28 100.0 32 ............................ ATTCCGAATGCCGCCCGGCCAGTCGGTGCCGA 9793 28 100.0 32 ............................ AGGCGGGCGAGGGCGGTCTGGGAGAGCAGGCC 9733 28 100.0 32 ............................ ATGATGCTGTCCCTCGGGATGTTCGTCTTCAG 9673 28 100.0 32 ............................ GATCAGCGCGCCGGCCTCATGCGGCGCTGGCA 9613 28 100.0 32 ............................ ATGTCCGGCATCAGGTTCATGAACGGCAGAAC 9553 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 9494 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 9435 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 320-1428 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZZJ01000130.1 Pseudomonas aeruginosa strain HUM-294 NODE_21_length_108669_cov_23.5577_ID_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 320 28 100.0 32 ............................ TCGTAGAACCAGATCAGCGCGCCGGCCTCATG 380 28 100.0 32 ............................ TGGCCAGGGTCGCGGAGTTGGAGCACGTCCTG 440 28 100.0 32 ............................ TTGGCGAGCGCGAACAACCACACAGACAGCGC 500 28 100.0 32 ............................ GCAGAAGGCCTGCTCAAGACGTGGCCGAAGCG 560 28 100.0 32 ............................ AGCTCCGCGACCCTTGCCAGGGCGGAGTCGCA 620 28 100.0 32 ............................ GTTCGCCGCATCGATCTTGTTCGAGTCCCCTG 680 28 100.0 32 ............................ GCCATCTGGTCGGGGTCTTGAACAGCATGGAG 740 28 100.0 32 ............................ TGCGCGGGCTTCGTCGTTTCTGGAGCTCACAT 800 28 100.0 32 ............................ AACCGCAGATGGCGCTGGACCGGGGCGTGCCG 860 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 920 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 980 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 1041 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 1101 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 1161 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 1221 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 1281 28 96.4 32 .............T.............. ATCAGGTACAGCACCAGGGCACCGAAGACGTT 1341 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 1401 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 19 28 98.9 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTCCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAAGCACGACAAGCAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCCGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //