Array 1 1004865-1005835 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP023043.1 Mannheimia haemolytica strain USDA-ARS-USMARC-193 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
   1004865	    32	 100.0	    36	................................	CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 	
   1004933	    32	 100.0	    35	................................	CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAA  	
   1005000	    32	 100.0	    36	................................	CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 	
   1005068	    32	 100.0	    35	................................	GTGGCACAGTAACACGAGCAGATGCTGATAAACGC  	
   1005135	    32	 100.0	    34	................................	CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG   	
   1005201	    32	 100.0	    36	................................	TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 	
   1005269	    32	 100.0	    34	................................	TGCGATTTTTGGATTTTTCGGGCGATAAATGATA   	
   1005335	    32	  96.9	    34	.....................T..........	TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG   	
   1005401	    32	  93.8	    35	G....................T..........	TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA  	
   1005468	    32	  93.8	    34	G....................T..........	TTTACCGTTTACCGATTGGATTTTAATGCTAGAG   	
   1005534	    32	  93.8	    35	G....................T..........	CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC  	
   1005601	    32	  93.8	    35	G....................T..........	CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC  	
   1005668	    32	  93.8	    37	G....................T..........	AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA	
   1005737	    32	  93.8	    35	G....................T..........	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG  	
   1005804	    32	  87.5	     0	G.........T..........T.T........	|                                    	
==========	======	======	======	================================	=====================================	==================
        15	    32	  96.5	    35	CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	                                     	       

# Left flank :   TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA
# Right flank :  CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA

# Questionable array : NO	 Score: 8.84
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCAGCCACCTACGCGTGGCTGCGAATTGAAAC
# Alternate repeat :   CAGCCACCTACGCGTGGCTGCGAATTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [8,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-1.10,-1.30] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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