Array 1 2048542-2049765 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP012694.1 Neisseria meningitidis strain 331401 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   2048542	    36	  94.4	    30	........G...A.......................	TTTTTGTATCCATTCCCAGCCGGAAATTAA	
   2048608	    36	 100.0	    30	....................................	CTTCTGCCTTTTTACAAGCTCGCTTTCTTT	
   2048674	    36	 100.0	    30	....................................	TTTGGTAAAGGTTTCTGTTGCGACCCGAAT	
   2048740	    36	 100.0	    30	....................................	CTTTAACTTTGACCGTGTGCAATCCAGTTA	
   2048806	    36	 100.0	    30	....................................	AACGGCAACCCACTAAATTTTGCAAATGCG	
   2048872	    36	 100.0	    30	....................................	AGTATTCGTCGATGATGGAAACTCGAGCAT	
   2048938	    36	 100.0	    30	....................................	ATGATGCAGGCTGCTCCGTCATCGTCTGCA	
   2049004	    36	 100.0	    30	....................................	CAATAACGGCGAGTTTACGCATCAATGCGG	
   2049070	    36	 100.0	    30	....................................	TACCCACGGCGGAAACCATTGCCACAAAAC	
   2049136	    36	 100.0	    30	....................................	TTAAAATAATAACCCAATACACGATGTTAA	
   2049202	    36	 100.0	    30	....................................	TCCTGCCAATTATCATACATAAGATTTTGC	
   2049268	    36	 100.0	    30	....................................	TTGCGTCTATGGTGTCCTTTGAGATGTCCA	
   2049334	    36	 100.0	    30	....................................	AAAACCAACCGGGTATTCATACACAGCCAA	
   2049400	    36	 100.0	    30	....................................	TTTAAAACCGCAAACCAGTTTGTATCCTAT	
   2049466	    36	 100.0	    30	....................................	AATAACAACCATTTTGTTATTTCGATTTTT	
   2049532	    36	 100.0	    30	....................................	TCCCGACATTGACGGAAAAACCCGAAAGCA	
   2049598	    36	 100.0	    30	....................................	TTATGCCGTTTTCATCCGGCTTGAACATTT	
   2049664	    36	 100.0	    30	....................................	TTGCGCATGATGGCAACGATGATTACCATC	
   2049730	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        19	    36	  99.7	    30	GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGGTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : NA
//