Array 1 986-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKS01000257.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 985 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 924 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 863 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 802 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 741 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 680 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 619 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 558 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 497 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 436 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 375 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 314 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 253 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 192 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 131 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 70 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAG # Right flank : GGTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTGTTCCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35-673 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKS01000032.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 96 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 158 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 219 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 280 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 341 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 402 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 463 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 524 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 585 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 646 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGAAACGAAAGAGGCTATGCGGTTGTTTATCGGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25743-23778 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKS01000082.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 25742 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 25681 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 25620 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 25559 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 25498 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 25437 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 25376 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 25314 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 25253 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 25192 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 25131 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 25070 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 25009 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 24948 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 24887 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 24826 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 24765 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 24704 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 24643 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 24582 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 24521 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 24459 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 24356 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24295 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24234 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24173 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 24112 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 24051 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 23990 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 23929 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 23868 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 23807 29 96.6 0 A............................ | A [23780] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTTAG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //