Array 1 159-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJF010000001.1 Pyrobaculum arsenaticum strain 2GA Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 158 24 100.0 44 ........................ CTCTGTACTGCATGTAGCGCTCCCTATCCACAATGCCCGACTCC 90 24 100.0 42 ........................ GGCGTTTGTTGACAGTTCAGCCCGAACTGTAATCCGTTGATA 24 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 3 24 100.0 44 GAATCTCAAAAAGAGGATTGAAAG # Left flank : AGAAGACACACCCCCCTCCCCCCGCGCCCCCACAAGCTCCACAGACGGCTCCCCCGCACTCTCACCCAACACCCCAAGCAACCCAGCCAACACAAACAACTCATCCACAAAACACACAACACCCCAAATAAAAACAAACCCCCACAAACCCCGCCGGCCCCCCAACCCCCACACCCCACGCCCCCAGCTATATACCCTATATAAACTGCGGCGTTTATAAAACGTCGTGCAACAAAAGCTTTACTTTTGTCAATATTTCAACTCTCATCGGCGCAGGGCGTTTTTAAACGCCGAAAATCCAATTTATAAAACGCCGTGCAGGACAAAGCCGCAAGACGCCGCCGGAGGGCAAAAACACGCCCAAAGCCACCCGCCACAACACACCGACGCCGAACCCAGAACAAGACACAAAAAACAAACCCAAAGACAAGCCAGTCCGAAACCAAAACACACCCAAGAAAAACTTAAAAACCCACCAAAACAAACCCCCAGAAACCCCA # Right flank : G # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 188420-188772 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJF010000002.1 Pyrobaculum arsenaticum strain 2GA Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 188420 24 100.0 40 ........................ CATGGGCAGGGGGGTCAAGGTGGTGGTGGGCAAGACGGCG 188484 24 100.0 41 ........................ GGATATATATTATGAGGTGGCCATCACCCTGGGAGCGGGGG 188549 24 100.0 39 ........................ AGACCAGGGCGAAGTTGGTGATGCCGCGCACGTTGACGA 188612 24 100.0 47 ........................ ATGATATCATCACTAACGCCGTGTGGAATAACTACATCTGCCTTAGT 188683 24 100.0 42 ........................ GATCTCACCGCGTACTCCGCCAGGGCTTGGGCCATGGCGTTC 188749 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =============================================== ================== 6 24 100.0 44 GAATCTCAAAAAGAGGATTGAAAG # Left flank : TTTTCCCCCTTTTTCGCGCTAACTTCCTGGCTGGGCCAGAAAGGCGGAAACGTTGAGGAAAGGGGAGAAACGGAGGGGTCGACGGAGAGAGGTTCAATACTAGACTCAAACGGCAGCTTGGCTTCAATACACTTCACACGGCGTCGTTGATTCAATGTCAAAAACCCCTCGCCGAGGGGGTTCAACATCTAAACGGCAAAGTTCAACAGTCGGCGTTTATAAAACGTCGTGTATCTTTCTCTTTACAGATGTCTATATTTCAACTCCTTTGGCATGTTAAAATTTGTAAAGGGGGATCCAATTTATAAAACGTCGTGCAGAAATACGGTGCCCGGCGGCGCCGAGGGGTTAAACACGGCATTCAACTCCCAGCTCCACAGCCAAACTGCCGGCAAAGAACAAAACTGCTCTAAAACCACCACGAGGGAAAACCGCTCCCAAAACAAAACCAAAAGAAAAAAAACTTAAAAACCCACAAAAACAAAACACCAGAACCCCCA # Right flank : GGTTCAACACCTGAGGACAGGGCGCCACCGCCCGACCGGTGTCAGATACTGGGAAGAGAGAAATCAAAATTGGGAGATGTGCAGGAAAGAGTCATGAGGGAGCCACTGCCCCCCACCCCGCCCCGGGCAGGGCGGGGCGGCCCTGGCGCGCGGGCCGAAGGCGGGGAGAGCCCGCCGAGGGGGTTGCCGACGCCCCGGGCGCGGCCCGCCCCGGAAGCCTCTGGCGATCCGGGGCCCCGTGTCCCCCGGGGCGCCCGGGGGGGATAGGGGACGTGCATAGTGCCGTAGCGGAGGGCTTGGTCAAGGGCAATCCACAGCTTCTCCTCCGACGGGACAGAGAGGTGTAGCAACTGGCCGTCGAGGGGTGCCCATATTTCTCTAGCCCCCCTCTCAATTACCACCACCTGCATCCAAGGAGGCACCATGTATAGCAACTGGTTCAGCTGCGTGGTCTTGCCGGTGCCCATGGCGCCGGAGAACACCACACTGCCCCTAGTCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 481067-477312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVJF010000002.1 Pyrobaculum arsenaticum strain 2GA Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================================== ================== 481066 24 100.0 45 ........................ TTTCCACAATTGCGGCGAAGTCTGCGTCGTGCGAGTACACGTGCC 480997 24 100.0 46 ........................ AGCTTTTTTACGCACGTCGCCTCGTCTGCCTCGCACCTCAAAACCC 480927 24 100.0 50 ........................ CGGCTACTTACTCGACAGCGACGCGGTATACTACTACGACCCGGTGGAGG 480853 24 100.0 45 ........................ TGGCTTTGTAGCTTATCTTATCCGCCGGTGGGACGCCGGCGGTCA 480784 24 100.0 45 ........................ ATGGTTCCGCAACCAACAGGAACCGGCCTGTATCTGCTGTTTCTG 480715 24 100.0 38 ........................ ATCATCTAGCTCGACTCCAGATGGCGCTATGAGCACCA 480653 24 100.0 43 ........................ CCTCTATGTACAGCTGGCCCCCAAAAACACACAAAAACAGAAA 480586 24 100.0 43 ........................ CAGTAACGCGTATAGTCGTTGCGCGAGCCTACTTTGTTCGCCT 480519 24 100.0 45 ........................ ACTGCAACGCGACGGAGACGCGACGCAACTATGACAAGTTCAAGA 480450 24 100.0 42 ........................ TTACACAAGCGTTAGTGGATGTATTGGTGAGCAAGTGCGATA 480384 24 100.0 42 ........................ AATGCTTAAGGGCCTGGGACCCCGACCGGGGTCCCGGGGCCA 480318 24 100.0 45 ........................ TGCTTGATGACGTCGGGAGGCGGATGGCCAGTTACGCCAATACTA 480249 24 100.0 43 ........................ ATAATAGATACTTAGAAGTAAAATATCCAAACGGCATTAGGGC 480182 24 100.0 40 ........................ TGCGCAGTTTCCTCTTGAACCCGCCGTACAGTAAGCCATG 480118 24 100.0 41 ........................ GGTTTCACAGACGCACGCGGTGACATGCGCAAATACAGACT 480053 24 100.0 39 ........................ GCAAAGAACCGTGCAAGATTTCTCCTGGCACCGGGGTCA 479990 24 100.0 41 ........................ ACCGCTTTAGCGGCCTTGATTAAATCTTCGTCTGAGAGAAG 479925 24 100.0 44 ........................ AACAAACCCCACAAATAGACAAGCGGGCAATCATGGCAATTATC 479857 24 100.0 43 ........................ CAGTTACGCCTTGTCCGCTTATTCTGTGGGCGATTATGTGGAA 479790 24 100.0 41 ........................ TGTCTTCATATATTGTGCAGTCCTCCCCTTCGCACTGCACT 479725 24 100.0 41 ........................ AGCCGACTACGTGGTGAGACAACAATCCAGCGACCGCGACT 479660 24 100.0 40 ........................ ACGTTGCTTCCCCTCCGATCTTCCCCCACGACCTGGGGGA 479596 24 100.0 45 ........................ GCGCATGTATATCACGTCTTTTTTCTTGGCCCCCCCTTCCGTTGC 479527 24 100.0 43 ........................ AAGGCCGCGCTGGGCCACAGCCAAGGCAGTATCGTGTAGAGGA 479460 24 100.0 42 ........................ GGGATCCCAGTCGGGGCCCTGGGGCCAAAGAACAGGCAAAGT 479394 24 100.0 44 ........................ CGTGTCCAGATACCTAGCCGAAACACTCTGCGGCCCGTACATAT 479326 24 100.0 42 ........................ GCTTTGCGCACTAAAGAGCTGTCGGACGACGTCATAGTTTTG 479260 24 100.0 37 ........................ GTAGATATTCTGAGTCGGATAATTTAAAGTCCGGCCT 479199 24 100.0 41 ........................ TCTACGAGGACGTAGCGCTCTCCTTCCTGCCTGACAAAGAC 479134 24 100.0 41 ........................ GTCACGCGGTACAAATGCACGCATGAAGGCGTAGACGTCTT 479069 24 100.0 43 ........................ TAAGCCATAATTGTGCAAACATCTGCATACGCGTAACAGCTTG 479002 24 100.0 37 ........................ CTTGATACTTCCTTATCGTGTCATAGCTACGACCTAG 478941 24 95.8 41 A....................... GCCTTATTGTTAATCCAAGGCCGAATTTGTCGAATACAACT 478876 24 100.0 44 ........................ CCACGTACGAGTTCGGCGGCGCGTGCCGCGGCGGCTCCTTGCCC 478808 24 100.0 41 ........................ ACGTGCGCCTATTTGCAGACCCGGTGCCCGTAGAGGCGAAT 478743 24 100.0 54 ........................ CTATAATATCAACTATCTTTATCCTATCCTCACCACTACGATAATAGTAAATAG 478665 24 100.0 46 ........................ CGCATCTCACTACAACGCCGACGTAGTCGGTTTGGCGCTGTTACTC 478595 24 95.8 42 ......A................. GCTGAGCCGGGGAGCACGACAGCTGTCGTAGCCACCGCCTTA 478529 24 100.0 42 ........................ CTTTTCTCTCTTTTGCCTTTTTCGGCGCGAGAGTTGAACTAA 478463 24 100.0 38 ........................ TTGGAATAGACTCCTCCAACGCTAGCTGAGCTCTGCAT 478401 24 100.0 41 ........................ CAGGCCGCGGCGTGCACAGAGGGGGGCACTGAGAAGACGCC 478336 24 100.0 47 ........................ CTTGTCGCACATATCGCTTAGTGTGTAGAACTGGCATACCTGGTAGT 478265 24 100.0 50 ........................ ACTAAGTGGGGTCTACGGCTGGGGTATTGGCACCCCCACATTATAAATCT 478191 24 100.0 41 ........................ ATGCTGTAAAGCGCCAGCGCTCTGCATGTGCACCTAATAAC 478126 24 100.0 41 ........................ TTTAAGAGGAGCGTTGTCAACGCCACATTTCCGCCCAAACC 478061 24 100.0 41 ........................ TGCCAGCCGTGGAGCTACGCCACCACATTCTCAAGAGACAA 477996 24 100.0 42 ........................ TTGGTTTATAAGCCGCCTCAATAAGGAGGTTGTAATCATGCC 477930 24 100.0 44 ........................ AAGAGCTGTTACGCAGTATAGGCTGTCGGGGGGCGAAGTGGCCA 477862 24 100.0 43 ........................ GAGGCCCAGTAGCGGCATAAGTTTGTCAAGCGCTTTTGATACG 477795 24 100.0 40 ........................ TGCCGTTACGCGCCTCGGGTATTGCGCGCATCAACGCATT 477731 24 100.0 42 ........................ GCTCATACGCGTATCTATACACCGCCTGCAGTGCGGCCTGTA 477665 24 100.0 40 ........................ ACACTACGGCTTTTAACGGTTTTTAGTTTTTCTAGCCAAT 477601 24 100.0 42 ........................ CGTATACTCACCACTTTATATTCACCCATAGAAATCTAAACA 477535 24 100.0 44 ........................ AAAATATCACACTGGTGACCCTCTCTAGTACAGGGAGTGGCGCC 477467 24 100.0 42 ........................ TTCTTCGACAGGCAGGGAGAGGAGAGGTACGCGCTGTACAAG 477401 24 100.0 42 ........................ ATTAGTATTTGGTCTAGCAGGTCTTTTATTTGTAGATATTCT 477335 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================================== ================== 57 24 99.9 43 GAATCTCAAAAAGAGGATTGAAAG # Left flank : | # Right flank : GCTCGTTGTATGGATATGTAAAATATATACTTTGTAGATGGGGGGTGTGAAAAAGGGGGATTAGATTTTTTCGACTTTGGTCTGGGTGAAGCCGCAGATTTTGCGGTACCAGCAGCTGGGGCATTTGGCTGGGTGGTAGCGGGGGTCTGGGGTCCAGCCGGCCATCATGCGGCGTATCTGGGCGGCGGTGTGCTTCACCAGTTCGGCGAGGTCGCGTGTCAGGGGGATGGCCTTTACCTCGCCCGTCTCGGCGTAGTAGATGTACGCGCCGGGTGAGGCCTTGCCGTACTGGGCCTGGGCGGCTAGGGCGTAGGCGGCGGCTTGGGCTTTGTGGTGGAGGGGCACCGCCCTGCCGGGCTTGGACAGCTTCACCTCGAGGGGGGCGGGCCTTCCCCGTATGAAGAGGAGGGCGTCTACAACGCCGCAGATACCGGCGCCGCTTAGCCGCGGGGCGTGCACCACCTGCTCGGCGCCTAGGGCCTTGGCCACGGCTTCCACAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //