Array 1 66255-64090 **** Predicted by CRISPRDetect 2.4 *** >NZ_NONR01000007.1 Escherichia coli strain MOD1-EC6954 MOD1-EC6954_7_length_207107_cov_63.5959, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66254 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGCGA 66193 29 100.0 32 ............................. TGGATATCTCCGATTCCCTGGCTAAATACGAG 66132 29 100.0 32 ............................. TGCTGTACGCGCTGAACACGTCGCTCAGTGCC 66071 29 100.0 32 ............................. CGGTCCGCATCGTCCTGATTGTTCTTACACTG 66010 29 100.0 32 ............................. TCGCCCGGCGTCAGCAGATCAGCGGCCTGCCA 65949 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGCCGTA 65888 29 100.0 32 ............................. TCAAACATTTGCGCGTTACTGCGTGGATTTGC 65827 29 100.0 32 ............................. TCACGACGCCCGCCGCACGTTCGGCAGTGTGG 65766 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 65704 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 65643 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 65582 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 65521 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 65460 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 65399 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 65338 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 65277 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 65216 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 65155 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 65094 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 65033 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 64972 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 64911 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 64850 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 64789 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 64728 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 64667 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 64606 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 64545 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 64484 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 64423 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 64362 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 64301 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 64240 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 64179 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 64118 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92794-91972 **** Predicted by CRISPRDetect 2.4 *** >NZ_NONR01000007.1 Escherichia coli strain MOD1-EC6954 MOD1-EC6954_7_length_207107_cov_63.5959, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92793 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 92732 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 92671 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 92610 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 92549 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 92488 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 92427 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 92366 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 92305 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 92244 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 92183 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 92122 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 92061 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 92000 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //