Array 1 27-666 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZQJ01000087.1 Pseudomonas aeruginosa strain W15Dec3 scaffold177.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27 29 100.0 32 ............................. CTGGTTGGCATCAATGCCGAGCAGCAGAAACG 88 29 100.0 32 ............................. GCTCAGCTGCTGGGCCAGTTCGCCACGGTCAA 149 29 100.0 33 ............................. GTGAGGGGCTACCGGTATTGCCGGACAACCTGC 211 29 100.0 32 ............................. GGTTCGAGTCCACTTCCCCCCACTCAAGAGCC 272 29 100.0 32 ............................. GCCCCGCAGTCCGCCGCATAAACGCCCTCTGC 333 29 100.0 33 ............................. ACATGGGAATCTCCGGCGGGCGAGTGGGCCGGA 395 29 100.0 33 ............................. GCATGAACCAATCAACTATCACCGACGCTCAGG 457 29 100.0 32 ............................. GCGATGCCTAGCCCATCTGATTCTCTGATTCC 518 29 100.0 32 ............................. ATGGTCGACGTGCTGATCCTGGCAATGCGGCA 579 29 100.0 32 ............................. AGGAATGGACGGCTCGCAGAGACGGATAACGC 640 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.4 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : TTTAAAAACAAATGGATGTGGGAAGTG # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 519-906 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZQJ01000188.1 Pseudomonas aeruginosa strain W15Dec3 scaffold82.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 519 28 100.0 32 ............................ CCATGGCTGGGCCGATCTCCCATCGCCCGCAA 579 28 100.0 32 ............................ ATGCCCGGCACAGCGAAGCCATGAGGGAGAAC 639 28 100.0 32 ............................ TCCTTCAGGTAACGGCGGCGACCGCCTATCTG 699 28 100.0 32 ............................ TGCGCACCGGTCGCGGCGGACGCTGCGCTACG 759 28 100.0 32 ............................ TGCTGCCTCGGATGCGTCGGGAGTTCGGCCCT 819 28 100.0 32 ............................ AGCGGGCTGCCAACGGCCGACCTGCTGCTGCG 879 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CAACCGCTTTCCGCGCAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGTGCGAAAGCGCGCCTGAAGTCGGCGATCAACGTCCTTGCCCTGACCTGCCTGCTCGACGAGAACGAAGAGCCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGATGCCCTCTCCGAGATCGAAGCGGCACACCCACGCCAGTAGCGCCGTCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGATATGTGATCCATACGAGTCCATTCGCGCGCGAACGGCGAGGTTTATCGCCCGTATCGGCCGTCTTGAAATGGCCTCCAAGGCCCGAAGCTTCCGACCCTTTTTTCGGACCGTTTCTTACGCCCTTGAAAATCAATGAGTTGCAAAGACTTGAAAAAAGAGGGTTTCAGACCGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCTGGGCTA # Right flank : CAGGCGTTCTCGGTCGGGTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //