Array 1 900666-902709 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051368.1 Salmonella enterica subsp. houtenae serovar 43:z4 strain CVM 24399 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 900666 29 100.0 32 ............................. CCTCATGCATGAATGAAGCGCAAAATCAAATA 900727 29 100.0 32 ............................. GTTTGATGGCGGCCCAAAAAAATTGGACAAAC 900788 29 100.0 32 ............................. TATTTTCCCTCCCGCCATGGAAGGGCGCGACC 900849 29 100.0 32 ............................. CCCGAAAATTACTCCGTGATTGGGAATGGGCG 900910 29 100.0 32 ............................. CTACACATATCACTGGTATTTCACGAATAACA 900971 29 100.0 32 ............................. CCGTAAACGTTGGTGTAGTAGTCAACCAGACG 901032 29 100.0 32 ............................. AAATGGTTAGCATGGAATGCTAAATTTGACGC 901093 29 100.0 32 ............................. TCGCTGGTATCCGACGAGGCGCGGGTGTTCGG 901154 29 100.0 32 ............................. CCAGCAAAAACGACAGCAAATTTTAGATGCGC 901215 29 100.0 32 ............................. TTGGACGTCGATGCGAAGGGGCTGCTGTTTAG 901276 29 100.0 32 ............................. CTACTTTCCGCATTTCTCGCAACATTCTCTTT 901337 29 96.6 33 ............................A GAGACCGCAGCTATGAACTCCTGCGCCATGAGC 901399 29 100.0 33 ............................. TAACTTCTGCCGGGGCTATATCGTTCCCTGTGC 901461 29 100.0 32 ............................. CCCATACCGCCGCCGAGCATAAATCCGGTGGC 901522 29 100.0 32 ............................. ATCCATGTAGGCGAGCATTGTAGCGCTCTGGC 901583 29 100.0 32 ............................. GTTCTGGTAGTCAATGTTGACTGATTCAGGAT 901644 29 100.0 32 ............................. GATTCAGATATCTATGCACTGTTTGCAGCCAA 901705 29 100.0 32 ............................. CCATATTCGTTAGCGCGTAACATGCTGGCTCA 901766 29 100.0 32 ............................. GCTGGTCATTGTCATATTTCCGCTTTCGATTA 901827 29 100.0 32 ............................. CAACCTGGATATGTCTGCGTCTGACGTGTCTT 901888 29 100.0 32 ............................. GCGCGGGTGTTCGGCAAGGCGCGGGTATTCGG 901949 29 100.0 32 ............................. ATTGCTAAACATGAATAGTGAAACGATAGGTC 902010 29 100.0 32 ............................. CAATCTGAAACAGGCAGTGAGTGATTATTTAG 902071 29 100.0 32 ............................. AGAGCTGATGAGGCGCGGCGACTCATGAATAA 902132 29 100.0 32 ............................. AGTTTAATTTCCAGATAGAGCGCTGGATACAG 902193 29 100.0 32 ............................. TTAGCAATAGGCTACGGCGATAAAACTTTTAA 902254 29 100.0 32 ............................. CCCCTTCGAAGCCCCCTCGAGGGTCAGCCCGG 902315 29 100.0 32 ............................. TTTCTTGCCAGCGCGTATTACGGTGAACTCGC 902376 29 100.0 32 ............................. ATGCGCCAGAATATCAGGCTATGTTTAATGAA 902437 29 100.0 32 ............................. TTTCCAGCTCCCCACCCGACGACCGAGGCGTG 902498 29 100.0 32 ............................. GGAATCAAAATGAACGCATCAGTAAATGAAGT 902559 29 100.0 32 ............................. CGCTGGCGCTGTTCTTCGGTAGATTTCTCCGC 902620 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 902681 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCATCGGAGTAGCTAACGATGAGTATGTTGGTTGTTGTGACGGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGATATGGCAGCAGATCTCCGTTCTGGCTGAGGGAGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGATTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGATTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGGGTATATTTAGA # Right flank : TTTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGTACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2660598-2661212 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051368.1 Salmonella enterica subsp. houtenae serovar 43:z4 strain CVM 24399 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================== ================== 2660598 23 100.0 37 ....................... CCAAAGACCGACAGCGACCGTAGTCCTGGCGGCAGCA 2660658 23 100.0 37 ....................... CCAGATACCATCAGCTCCTCCAGTTCTGACGGCAGCA 2660718 23 91.3 37 .........T........A.... CCAGATACAATCAGCTCCTTCAGTCCTGACGGCAACG 2660778 23 100.0 37 ....................... TTATAGGCCCACAGCTTACATAATTCTGACGGCAGCG 2660838 23 82.6 37 .........T..C...TT..... TCAGATACCGACAGATCCTGTAGTCCTGGCGGCAACG 2660898 23 100.0 37 ....................... TTATAGGCCCACAGCTTACATAATTCTGACGGTAGCG 2660958 23 82.6 37 ....T....T......TT..... TCAGATACCGACAGCTCCTGTAGTCCTGGCGGCAACG 2661018 23 78.3 37 T........T......TT.A... CCAAAGACCCACAGCTTACATAGTCCTGACGGCAGCG 2661078 22 87.0 37 ........-T.......G..... CCAAAGAGCGACAGTTCCCGTAGTCCTGGCGGCAGCA A [2661088] 2661138 23 87.0 28 .........T..C....T..... CCAGAGACCTCCAGCGTCCGTAGTTCTG Deletion [2661189] 2661189 23 73.9 0 G........T..CAG..T..... | C [2661195] ========== ====== ====== ====== ======================= ===================================== ================== 11 23 89.3 36 CCGGCAGGCGGGTCAGCCGGTTA # Left flank : GTATTTCCCTTTTTCTGCATTATGTACCAGCTGTACGTTCTTCATCTGGTGCAAAAAAAATGTGATCCGGTCCTCGCAGCTTGAGGTTGCCTCTGTTGCCAGGGCAAAGGTGTTTGCTCTCAGCTCCTCATCTTCAGCCAGGTGTGCCAGCCAGGACGATATCTGTGCCTTAAACCCCGCGTCCTTTATGAAGTTTTCCGTCTCACTCAGTCTGTCCAGGAAGAGGCTGAAGGCGGCGGCGTTATCTTCCTGTCCGAACATATGCCATCTGTCTGCAGGAGCCGGCTCCCCCTCCCGGGCAGGCGCCAGCCAGTCGGCGACCGCCAGGTGCAGTGCCCGGACTTCCCGGGGGGCGGAGGCCCCCGCCATATCGAATCGTATCCTGGGGCCTGAATAGCCAGGCGCGCTGGTGATATTCTGCAGCGCCTGCAGAGTGCGTTCAGACAGTGGATTCCCTTCCAGATTTACGGTTGCCTCTGAAGACAAACCCGTGATACTTT # Right flank : AGATTATTATCAGGAATAACCAGTGTGGTAATGTGCGCGGGTAAACAGTCTGGCAAGGTGGTAAGAGCTGATTCTCCCACGTTAAGCACTGCATTGCCATTATTCAGGCAGGCACGCATTTTCTGTATCGCTGCTGCACGGCCGCGTGACTCTTCTGCGGGTGCGGCCCTTCTCCACGCTGACCAGACAGCATCATACTCTGCTGGCGTCTGTGGAGCCGTTGTGGCAGGGAGGAAGGATGTCCTGAACGTCCCGGATGCCCCTTCCGCAGGTCCTGCGCACTCCTCTCCCTGTGCTGTCTCCAGGGTGAAGCGATGTATTTCATGGTACCCCAGGCAATTCACGGTATAGTTCCCGTAGTCATCAAGGGTGACCGACAATATCTCCTGGCTGTCTGCATCCAGGATACAGAACTGGCCTTCCCCATGCCGGCCGGATTGTATGCTTTCCTCGCATCCGGCATACGCGAGCATCCTGAGTCGTTCAAATCTCCTGACCAC # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGGCAGGCGGGTCAGCCGGTTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //