Array 1 234207-235820 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031252.1 Neisseria elongata strain M15911 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 234207 32 100.0 35 ................................ AACCAGCCTGAAGGCGAAGAGTAGTTTAAAGCCCG 234274 32 96.9 33 A............................... ACAATATGGACATGCGCCGTCTAAGCCTGAACG 234339 32 100.0 33 ................................ ATATAAGTCAAGCGGATCACGCGGGACATGGCC 234404 32 96.9 33 C............................... CTTCGGCGGTTTGTAAAAAGACTTTGTTGCAGT 234469 32 100.0 35 ................................ CGTGATAAATCCGAAAAAAACGGCGGCATAAAGGC 234536 32 96.9 33 C............................... GGGCGAAGGCGACGGTCAATCTGATTTGGAAGC 234601 32 96.9 33 A............................... TCCGCGTGCAACCGCGTGCTCCATCAACCTCTG 234666 32 96.9 33 C............................... ACCGAGAAAAAGAAAAAAATGAGAGATAAAACG 234731 32 96.9 32 C............................... CCCTGTCATAACAGATAACGGCGTTAAACAGA 234795 32 100.0 34 ................................ ATATTAAGACGGCCTATTTAAACTCTTTCTCCAA 234861 32 96.9 34 C............................... CGCTTCCTCGCGCCTGTAATCCTCATACGTCTTT 234927 32 100.0 34 ................................ AACAAAAAACTAATCATGATGAACCGCCAGCCCC 234993 32 100.0 33 ................................ GATAATCCTTTGGTTGGGGCGCGTTTTGAGAGC 235058 32 100.0 33 ................................ CTCGGCCAAAGCTTGTAACTGCTACACGCAGCA 235123 32 96.9 34 A............................... TATCGTCATTTTGAAAAGGCCGTCTACATTATTC 235189 32 96.9 33 A............................... AAGCACGAATGCAAGCGGCAGTTTCAGACGGCC 235254 32 100.0 33 ................................ GGCTTCGGCATTACACGCAAGGGCAATGGCTCG 235319 32 96.9 35 G............................... CTTATACGGGCTACTAAGGGATTCAGGCCGCCGCG 235386 32 96.9 33 C............................... ATGTTTCTGGGCGATGATGTAGCCTTGGTACAG 235451 32 93.8 43 G..........C.................... TCGTAAATGCGGCCAAACCACGGCAGGCCGAAGTCAGCCGCCT 235526 32 96.9 34 ...........C.................... ATTAGCTCGAGCGTACTCATCGGTACTTCGCGGC 235592 32 93.8 33 C..........C.................... CATCCGTTGATCCTGATGATTTCGATGTCGATC 235657 32 87.5 35 C..........CG........C.......... GAATTTTTATGCCTACGGTACTTTTGAAGCCATCC 235724 32 90.6 33 C..........C.........C.......... ACTACGGCGGTTTCCTTACCGCTAGAATTGGTG 235789 32 81.2 0 G..........C....A.....A.A..A.... | ========== ====== ====== ====== ================================ =========================================== ================== 25 32 96.4 34 TCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCAGAAGGACAGGCAAGACTGCGGCGCGTGGCAAAGTTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAATGGGTTATTTTAAAAGACAAACTCTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCAGCGGTCGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGTGGTTCTCATGAAAATGCGACAGGGTTGGCGAACTGGAATTGTTCTTTAACAATCAGGATATTGTGAATGTGGGTGTAACAGACAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTAGGAGCTTAGCGAAATCGGGGCTGCGAAGCCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CGGTCGCCATCTCCTTTTGAAGAGGTATCTTGATCTACGGCGTTCAAACAGCCATAGCCAAAAAATATCCTTGCTAAAATGATCTGCTGTTTTGTCAATATTTGAAGCGGTGCGTATAATCCCCGTTTTTATCACTACCGAACGAGGGGATTCGTCATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGACCACACCAAAGTAAAAGCCCCTTATGTGCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAGACCATATGGAAATGCCGTCCCTGCATTCGCTGGAACACCTGATGGCCGAATTGTCGCGCAATCATTCTGATAAAATCGTGGACATCAGCCCCATGGGTTGTCAGACCGGTTTCTATATCGCCCTGCTGAACATGGGTGATTATGACGAGGTTTTGCAACTGATTGAAAATACATTGAAAGATGT # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //