Array 1 35532-32028 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHG01000015.1 Bifidobacterium pseudolongum subsp. globosum strain 1549B Contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35531 29 100.0 32 ............................. CTTGATTTCATGGACGACACCGACCGGCGTAA 35470 29 100.0 32 ............................. GAGGACTACATGGTTTTCAACGGGGCCGCCGA 35409 29 100.0 32 ............................. GCGTGCAGGATCGTGGACACGTCACAATCCAA 35348 29 100.0 32 ............................. GTGTCATGGGCCACCGAGACGCTCAAGAAAGG 35287 29 100.0 32 ............................. ACCATTGCCAGCCCTTCTGGAATGGTTGGATG 35226 29 100.0 32 ............................. GCACCATTGACGCCAGGAAGCAGCGTACTGGT 35165 29 100.0 32 ............................. TGTTGCACCATGCCGGTCATGGCCGAACTGGC 35104 29 96.6 32 ............................T TGTTCGGTTCGCCCATCCAATATGTTTCGGGT 35043 29 96.6 33 ............................A CAGCGCCCTGCAGGCTCGGCTCGCCACAATCGG 34981 29 100.0 32 ............................. CTCCTCAAGGACGCGTTCGGCATCGTCTGCGA 34920 29 100.0 32 ............................. AAATCGACCGTGACCGCGACGGAAAATGGCCG 34859 29 100.0 32 ............................. GCGCCGCCCTTGACGACCGCGCCGTCGAAAAA 34798 29 100.0 32 ............................. CCGTAACGACGCATAAGAGAATCAATGCGCTG 34737 29 100.0 32 ............................. GTGCCGTAGACGTCCACGAGCGCGGACTTGCC 34676 29 100.0 32 ............................. AGGACGCGGGCGGCACCACGCCGGACACCAAG 34615 29 100.0 32 ............................. GCGACGCTCGTACACACTCTGTTGAGGTTGCG 34554 29 100.0 32 ............................. GCGCCGATGAGTTTGACCATCGCGTCTCCTGC 34493 29 100.0 32 ............................. ACGCTGCCGCGCGCGTCCACGAGGTCGGCGAG 34432 29 100.0 32 ............................. ACTTAGAAAATTCGTGTTTTCACCTCCCCTCT 34371 29 96.6 32 ............................T TGGCCGACGCCATCCCCGGCGCATCGGGCAAA 34310 29 100.0 32 ............................. GCGGCCGTCACGCCCGACCATGTGGACAGGGG 34249 29 100.0 32 ............................. GCCGTCATAGAACTCGCCTACCTGCGTATCCG 34188 29 100.0 32 ............................. GTGTCGAGCACGTCCTTGCCGTGCTTGAACGC 34127 29 100.0 32 ............................. ATGGGACTAGCAGAGTTGCGAAAAAGTAAGAA 34066 29 100.0 32 ............................. ACGAAACCACCCACCATCCAATCGTTCACCGC 34005 29 100.0 32 ............................. AATTCTACAATTTCCGCGTAACGTTTCACGCT 33944 29 100.0 32 ............................. ACGTCGCGGCGCTCGTCCGCAAGGATACGCAC 33883 29 100.0 32 ............................. ATCGCTTTCAGCTGCGCGAACTGGGCTTCGAG 33822 29 100.0 30 ............................. AGAAAAAAGGAGACGTTTTTCAAGGATATT 33763 29 100.0 32 ............................. TGCTGCGCGTCGTCCACATTGTCCATGCTCGG 33702 29 100.0 32 ............................. CTGTCGAGATCATGTTCGAACGCGACGAGCAC 33641 29 100.0 32 ............................. ATCGCCTTGAGCTGCGCGAACTGTGCTTCGAG 33580 29 96.6 31 ...............A............. TGCCGCTCGTCTCGTCGATCTCGGTCGCGAC 33520 29 96.6 32 ...........................T. TTCCTCGACGGCAGCCAGGAGATCAACACCAC 33459 29 100.0 32 ............................. ACACCAAAGAGCGTGTTGAACGCGCTCGCAAG 33398 29 100.0 32 ............................. GCCCGGCAATGCGTTGAAATATTCCTGCTGTT 33337 29 100.0 32 ............................. GTGTACGGCGGCAGCGACCACACCGACCCGTA 33276 29 100.0 32 ............................. TGGCGGTGGGCAGACCGTCGAGGCTGTTGCTG 33215 29 100.0 32 ............................. TCAGGCTTCGTCGCGCCGATATTTTCCGGCAA 33154 29 100.0 32 ............................. ACGTAAGAAAAAGACTAAAAAATCCTCACCTA 33093 29 100.0 32 ............................. ACGCACAGACCGCGACACCACCCACACCGATC C [33084] 33031 29 100.0 32 ............................. TGAATGCCGGCAGGTCGATGGGGCGGATGAGG 32970 29 100.0 32 ............................. GAACGCCAGATGGAACATTACGGGCGTGATTA 32909 29 96.6 32 ..................A.......... TGTACCCATATGCGATGCTGTGCGCGTTCGAT 32848 29 100.0 32 ............................. GGAACTCGACCGTGGAATCCTCCGGAATGGTG 32787 29 100.0 32 ............................. CTGTTGTGCGAGCGTGGGGGCGGCGGCGGCGA 32726 29 100.0 32 ............................. TCCGCGACACGCCGCTCGTACACACTCTGTTG 32665 29 100.0 32 ............................. AAGCCGCCCATACAATCCACGCCGTCCAAAAC 32604 29 100.0 32 ............................. AAAAACGAACACCAATGGCGTGCCCATGTGGC 32543 29 100.0 32 ............................. ATAGACCACATCACACTGCACATCATGGCAGG 32482 29 100.0 31 ............................. CCCGTGCTGTATCGACGCCATTTTACCCACC 32422 29 100.0 32 ............................. GCATGCGCGACCAACTGCACTACGGAGACACC 32361 29 100.0 32 ............................. CGGGTGACGCGGGCGATGCTGCAGGATTGGGT 32300 29 100.0 32 ............................. TACACCACAGGACGCGGCGGGCACAAGATAGA 32239 29 96.6 32 ............................T ACGGGCCAAGCATCGCTGAACAGTGGGTGAAC 32178 29 100.0 32 ............................. CCGTCGCGCAGGGTGCGTGACTGGATGTCGTG 32117 29 96.6 32 ........................G.... GCGTGGGCGAAACGAGAGCAGGAGCTGTGGCG 32056 29 86.2 0 ..A......T....T.............G | ========== ====== ====== ====== ============================= ================================= ================== 58 29 99.3 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : GTGCTCGAAGACGAGTGGAATGAGGAGCCATGATAGTCATCGTTCTCACTGCATGCCCTTCAGGATTGCGCGGGGATGTGAGCAGATGGCTACTGGAGATATCTCCTGGTGTCTTTGTGGGACATATCAGCGCTCGTGTGCGTGAGAAGTTGTGGGAGAGAATCGTCGACACGCTTAAAGACGGTAGGGCCATTATGGTGTTCTCTGCGAGAAATGAGCAGCATCTTGACTTTCGTGTGTTCAGGTCTGATTGGAAGCCAGTGGATTGTGATGGATTGCAATTGATTAAACATCCGAATGAGGAAAAACACGATACCTATGCGGGAACGAAACGGCATGGGTGGAGCAACGCAGCCAAATATAGGCGTGCGAAGAAATATCGTGGTTAGGCTTGTACATTTCGTAGCCGCCTCCTTCTCATTGAGACCATGAAGAGAAGAAGTGAAGGAAAACGGTTTTCTCCTCATTCTGATATGTTGGAATTATTGGGATTTCATAGC # Right flank : CATGTACATTGATGAACGGAGGTAAATGGCATGCAGGCTGCAGAGGGAATGACGTTCGAGGATCTCGTCGATTGGTATGTCAGACAACTCGTTCTCTATGGCGATGAGAAAAACGCCGAGGTCATCAGGAGTGCCCTTGCATGCGGCGAACCGGTAGTCGCTCTGAATATGGCAGTAATCCGGTCAAAACAGTTGAACATAATTCCTGAACGCCATATCATCGAGCGATCATGCGAATTATTGGATTCTGATGATGACGGCATGGAGATCTGCAAATACCTTTTTGCCTCGAACGGTGATTCCGTTGCACCGTGACATGGACCTGATCCAGCTCATCATGGTGGGGGATTTGTCCGTGCCGTTGAATGCGGCGGTTTGCCCCGCATGCGCGGAGATTCTGAGCTCGACGAGATTCGCGACTCCATCGACCTCGACGCGCTCATGGCAGCCCACGACATCTCCAACAACTGACCCATATTCTCCCATACACGAAAGGCCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //