Array 1 18340-17711 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDH01000005.1 Bacillus sp. TH007 contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 18339 32 96.9 35 ...........................T.... CCATTCAATGGTCTATATTCTGTTTCAAGGTTTGC 18272 32 100.0 35 ................................ TGTGATCAATTGATCTGCAATATCAGCTAAATCAA 18205 32 100.0 35 ................................ TGACAAAATCAAAGAGGAGCTTCTTACAGCTCTAA 18138 32 100.0 34 ................................ TGTAGTCGATCCAACCGCCTGCCTGTTCTAAACG 18072 32 100.0 33 ................................ AAAAAGTCCTGGATTGGTTAATGTAGACGTTCC 18007 32 100.0 34 ................................ TTTTCTTTGTGCTAAATCTATTTGAATTGCCTCG 17941 32 100.0 35 ................................ TTGACCTGTTTTTGCATTAGAAAGAACCACCCGTA 17874 32 96.9 34 ........C....................... GGAAAAATAGCGTGTCCCATCAGGATCAACAAAC 17808 32 93.8 34 ........C.C..................... TTCTCGGTTGTGTAGCTTGTGAGGGAGTTGATGT 17742 32 71.9 0 ........C.C.....A...A.A...CAC.G. | ========== ====== ====== ====== ================================ =================================== ================== 10 32 95.9 34 GTCGCACTTTACATGAGTGCGTGGATTGAAAT # Left flank : TGGATTGAAATTTAGGTAATTTATCTCATCATTTTTGTCTACCGGTCGCACTCTACATGAGTGCGTGGATTGAAATGCGGCGATTTGCATACGATAATCAACTATCGCGTGTCGCACTCTACATGAGTGCGTGGATTGAAATCTATCTGATCCAATTCTATTTTCACGTGTTTCAGGTCGCACTCTACATGAGTGGATGGATTAATAATTGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATATATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATTATTACCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTCTGCGTTTTATACAAATTCAAGTACTATCCAGTTCAAAATCTACACATATGAATAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACGAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGGACTTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCCTGTTTGGCAATTTTCATAATCTCAGTATCAGGGACCGGCACACGGTTAAAGGTGTCTAAAATGATGATCTCACCATTCATACTGCGTCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGGCGAAATAATAATGTCTTCAATCTCATC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19059-18631 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDH01000005.1 Bacillus sp. TH007 contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 19058 32 100.0 33 ................................ ACCAACGATAAAGCCAATGAGGCAATCAATGAA 18993 32 100.0 35 ................................ AAAAATATCTGAAGATGACTTAGAACTGTCATTAT 18926 32 100.0 34 ................................ AAATTCATTGTGTTGCCCCTCTCTAGGTTTTGTA 18860 32 100.0 33 ................................ TTAGGTAATTTATCTCATCATTTTTGTCTACCG 18795 32 100.0 34 ................................ GCGGCGATTTGCATACGATAATCAACTATCGCGT 18729 32 100.0 34 ................................ CTATCTGATCCAATTCTATTTTCACGTGTTTCAG 18663 32 90.6 0 ...................GA......A.... | T [18634] ========== ====== ====== ====== ================================ =================================== ================== 7 32 98.7 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TTTTGACGATCATCCCATAAAAAATGTTATATTAGGGCGGAAATCGGAGTCGCATTCTACATGAGTGCGTGGATTGAAATTCCCTCCAATCTTCGGTATTTCAACGCCGCCCATATCGCACTCTACGTGAGTGCGTGGATTGAAATAAAAAAGATGTACCACGGATGCCATGAATATCGGGTCGCACTCTATATGAGTGTGTGGATTAATAATTACGAAAAACATAACTTTGCCTCTCAGTAGTCATGTACTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGATTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCTTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TGTGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGGATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATATATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATTATTACCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTTTACATGAGTGCGTGGATTTAAATCCATTCAATGGTCTATATTCTGTTTCAAGGTTTGCGTCGCACTTTACATGAGTGCGTGGATTGAAATTGTGATCAATTGATCTGCAATATCAGCTAAATCAAGTCGCACTTTACATGAGTGCGTGGATTGAAATTGACAAAATCAAAGAGGAGCTTCTTACAGCTCTAAGTCGCACT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 27752-27184 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNDH01000005.1 Bacillus sp. TH007 contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 27751 32 100.0 34 ................................ GGTATAGAATCATCAAGATTCACAAAAGCTTCCC 27685 32 100.0 34 ................................ ATTTTCATATCCTTTTCCCCTCTCATAATCTAAC 27619 32 100.0 35 ................................ TGAAAGGGATGCACACTCCCGAATAGACAAACTAA 27552 32 100.0 34 ................................ TTTCAAAAGGTTAATCGTTTCAATAGCTTTAGAC 27486 32 100.0 35 ................................ CAGTCGAACATATAGAAATCAATGTCCGTCATGAA 27419 32 100.0 35 ................................ CTTAGAACTTATTTGCTCGTCACGGTCTGTCGAAA 27352 32 100.0 36 ................................ CCTGATGGTTTAGAAGGCTTTTTAGAAGGCTGTGAC 27284 32 100.0 33 ................................ GATTTCTTCGTCTGTTAAATCTTCATAGTATTT 27219 32 84.4 0 .......C...T............T..TC... | AC,G,A [27195,27201,27210] ========== ====== ====== ====== ================================ ==================================== ================== 9 32 98.3 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATAGCCGACCGGCTGGGCGAATCAAGACAAAACATCTCAAACATCCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCAAGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTACATCAAACTCATCGAAAAAGTAGACAGGCTGATTTACCAAGAAGGACCTGGATTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATCAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAATTGGGTAAAAATGTATATTTCATGAAGGAGAAAACAAAATTCTTTATTGAAAGTTGAGGATTTTACCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : GATTGTGTCTTAAACGGTTATGACTACCTTAAAGATCATCTTCTTACAACATCCTCTTTCAAATAGCCATCAAATATACTGTTCATTTGTACAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATCAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAATGTGGTGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCCGAAGAAGTCGACTTTGCTTCTAATCATGGCGGGCTGACAGGAGATTCTAGAGAAGTGATGTGGTTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGTGTCATCATTATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTTTTTGATGAGCAGTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //