Array 1 6072-5740 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOEF01000031.1 Amycolatopsis saalfeldensis strain DSM 44993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6071 29 96.6 32 ............................T ACGTCCACCACTGCGATCCAGGTCCGTCGTCC 6010 29 100.0 32 ............................. GCGTTGCCGACCCGGTCGAGGTCGACCTGACT 5949 29 96.6 33 ............G................ GCGCCTGCTGCTCCTGGTTTGTGACGGCACGCC 5887 29 93.1 32 .................T.A......... CGCGCCGCGGTCTACGGTCTGCGCGTCCCGGC 5826 28 86.2 31 T..............A.....-.C..... TCGGTCAACCCAAGGCAGTCGCGGCCAGCGA 5767 28 86.2 0 ........-.....G............TT | ========== ====== ====== ====== ============================= ================================= ================== 6 29 93.1 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : ACCCGAAGAACCTCTGGCCCGAACCGCATGCCGGCAACGAAAACTCGCGCAGCAAAGACTCGGTCGAGAACGCGGTGAAGAAGGCCGTCTGCGCGAAGAAAGCCACCCTGTCTGCCGCGCAGCACGCCCTGCTCACCGACTGGACCACCGCCGAATCCGTCCTCGGCATCAGCTGACCACCGGCCATCGCGGCAACCGACAACACGGCACACCCGTGCCGTCCGGACCACGCCGAGCCGGGGCGATCAGGTGACGTCAGAACCGCAGCACAGGTTCCAGCGGGAGGATTCGCCGGGTGCGCGAGGAACAGGTGCCGGTGCGGATCACCTGAACATGCCTGACCGCGGCCAGCACCGGGTTCCTCAGGATCCGAATCGTGGTGGCGGTGGCTAGGAGCCAACCGCCGTCATGTCTGGCAGCGTCTACCCTTGACCGACAACGCGCTTTCGAAAGTGAATGAAAACCAGCCCTCCAACGCGTAAAGTCCCAGTTCACGAAGT # Right flank : AGCTACCCGTACGCCGGCCATCCGGTCTGTCGTTACCACGATCGGGTGCGCCCTGGTACGGGGTGTAACACAGCCAGAGCGCCTGGCGTCTTTCCTGCTTGTGACGCCGTTGTGGTCACCGTAATCAGGGGAGGGGTTGTTCGTCGGCGTGGTGGATGTCGGTGTGGTGTGGGCGAAGTCCGTGCTGGATGCGCATGGGCGGACGACGCACTGGTTGCCGTTGCGACAACATCTGGATGATTCCGGTGGAGTGGCCGGTCTGTTGGTGGACGAGTGGCTGTCCGAGCAGGTGACCGCGCGACTGGTTCACGAAATCCCTGGCGATATCGAGGGTGTACGGGCGCTGGTAGTGTGGCTGGCGCGGGTGCATGACGTCGGGAAGGCGAGTCCCGCGTTCGCGGTACAGGTGCCGATCTTGGCGGATCGGATGCGGCACGCCGGTCTGGTGGCGTCGTCGGCTCTGTTGACTCATCCGCGGCGGAGCCAAGTGAACCATGCCC # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17499-17107 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOEF01000031.1 Amycolatopsis saalfeldensis strain DSM 44993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17498 29 96.6 32 ............................G CGGTGAAGGTGAGCCGCAACAGCGTCGCTCGT 17437 29 96.6 32 ............................T GCGTTGTAGCGAAATGGGTGACCACGTGGTCT 17376 29 100.0 32 ............................. TCGGCGCGATGTTGCGGCTGCTGCACAACCTC 17315 29 96.6 32 ............................G CGTGGGACGTCGTCTCCGGCGCCCCGTTCTAG 17254 29 96.6 32 ............................A AACGAAGTGGGCCGTCCTCATGCACCGTTACC 17193 29 100.0 30 ............................. GTGCGGTCACCAGCTCGGACGGCTAGATCC 17134 28 72.4 0 .G.-.....A.A...A...A.A..G.... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.1 32 GTTCTCCCCGCGCGAGCGGGGGTGATCCC # Left flank : ACATCGACGTCCAGATGTGCGGCACCGACCAGTGCGGCGTCATCGAGCAGATCCGCGTGGACGACACCTACCGTCGCCGGCGTATCGGCACGCTCCTGGTCGCCGCCGTGCTCGCGCGCGGCCCAGGATTCCAGTGGTCGACGACGAAGGTCGACAGCTCGGCGAGCGCGCGAGCGTTCTGGGCATCCCAGCACCCCGCCGATTCAATGAGCCTTGGCAAGCCGCGCTACTGCTCGCACATGAAGATCGTAAACGGTGAAGGTCTCTAGCGCGGTGGTCTGCGTGCCTTCGCACAGACCACCTGCGCAACGCTCAACCGCGCGGCCTGGCCCGCGTGTCCAGCTCAGATCAGGAGTTCGTCCTCGCAATCCGAATCGTGGTGGCGGTGGCTGCGGCCCAACTGCCGCCAGAGCCGGCAGCGTCTCCCCCCAACCGACAACGCACCTTCGAAAGTGAATGAAAACCAGCCCTCCAACGCGTAAAGTCCCAGTTCACGAAGC # Right flank : GCATCGACTGCGCTCGCCACCGCGGCACCAGTGGAGTTTTCCGCTCGAGCGGGGATGGTCCGGACTGACACGCGGTCTATATCTCTCGTTCGACAGTTCCCCAGCCTCGGCCGAATTTGATTCCGTCATATCCTTGCACAAATTAGACAACTTCATAAATGCGAATATCGATGACTATCGGTACTCTGCATATGGCAACCACTCACCATTTGCCAGAAGTGTCGACGGCACACGGAATATTGCGAGTTCGTGGGCGAGGTCCCAGCGGAAAATGTTATCATCGCCCGTGCCGGTGAGGACCTTCCAGATGACGTCCGTCATTGGTCCACTGTGTTCACGCCACTCACCGAGACCTTGACTGTAGTAGGCGACGCGCCACTGGTTCGGGTCTGCGGGTTCAGTGATCCAGCAGAACATTCCCCCTTGCCCGTCGTGACCCCAGGGCAGGAGCCCGCCCAGTTCCGGGAACGTCCGATAGCCTGTATCTTCGATATATTCCA # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //