Array 1 226991-229640 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSUP01000002.1 Klebsiella pneumoniae subsp. pneumoniae strain 63 GCID_CRE_0134_NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 226991 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 227052 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 227113 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 227174 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 227236 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 227297 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 227358 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 227419 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 227480 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 227541 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 227602 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 227663 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 227724 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 227785 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 227846 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 227907 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 227968 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 228029 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 228090 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 228151 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 228212 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 228273 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 228334 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 228395 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 228456 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 228517 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 228578 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 228639 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 228700 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 228761 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 228822 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 228883 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 228944 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 229005 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 229066 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 229127 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 229188 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 229249 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 229310 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 229371 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 229432 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 229493 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 229554 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 229612 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 70759-71693 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSUP01000027.1 Klebsiella pneumoniae subsp. pneumoniae strain 63 GCID_CRE_0134_NODE_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70759 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 70820 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 70881 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 70942 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [70996] 70996 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 71057 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 71118 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 71179 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 71240 28 93.1 32 ..........-..T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 71300 29 93.1 32 ............TC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG 71361 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAAATGGGACCTGTTC C [71372] 71423 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTAAATA 71484 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 71544 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 71605 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 71666 28 89.7 0 ..........A...........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.7 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //