Array 1 32-314 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJL01000002.1 Sulfolobus islandicus M.16.12 contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 32 25 100.0 40 ......................... TTAAAAATTAGATGATTTGTTAGGCATGTTTGGCTATCCT A [39] 98 24 96.0 39 ..........-.............. CCAATAAACCCCTACTGCTTACGTGGCTTAATACGTTAT 161 25 100.0 42 ......................... TTATATCAATAATGATGGTCTTATCACTGCTGTTCTTCTTCC 228 24 96.0 38 .............-........... ACGAGTTTGTAGAGTTCAAACGTCTGGTTGAGTATGTT 290 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================== ================== 5 25 98.4 40 GATTAATCCTAAAAGGAATTGAAAG # Left flank : AACCACTGCCTAGCACTGTTTGGGTGTCCATG # Right flank : GATTTATCAAAAAGCGGAATAACGAAGACGCCAAATTCGATTAATCCTAAA # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.08%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 861580-862422 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJL01000001.1 Sulfolobus islandicus M.16.12 contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 861580 25 100.0 42 ......................... TGTGACCATTTTTTTATCCCTATATTATACTATGTTTAAGTA 861647 25 100.0 37 ......................... AAATATCCTGAATCGGCATATTCGAAATTACACTGTT 861709 25 100.0 37 ......................... ATTATTCTAACTCCTTTCAATTCATTTTGAGATAATG 861771 25 100.0 39 ......................... TTTAGGTGCTTTCTCAGATGGTTGAGGTATGGATTCCTG 861835 25 100.0 37 ......................... TTAAATATATGCCAATATCTTATATAATTCTACAATT 861897 25 100.0 35 ......................... TTATTCATTTCCGCCTTATTAGTAACGCCTACGCT 861957 25 100.0 36 ......................... TGCAGTTCTTCTAATTCTTTACATATTTTTCCTCAG 862018 25 100.0 38 ......................... TACCCTACAGCGAATTCCACACTCTTTACTTTATGCCT 862081 25 100.0 41 ......................... TCATTTAATCTCAATTTTTAGATGCAAATACGACCCATATT 862147 25 100.0 36 ......................... GGAATATATATGTGGGTATCGATATGAACCAGCCTG 862208 25 100.0 38 ......................... TTAACTATGATACATTCCCGTACCAGACCGCAACACTT 862271 25 100.0 38 ......................... TTTAAGAAGTCATAGTTACTTTGCCTTTGCAAGTCTAG 862334 25 100.0 39 ......................... CATATCTCTCATTCACTTTACGCAAAGTGAAAATTAAAT 862398 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================== ================== 14 25 100.0 38 GATTAATCCTAAAAGGAATTGAAAG # Left flank : AAAGATAGATTAAAAAATTAACCATAAAAGAGTTCCTTATTTTTTGATCGATATTTATTTTTTATTTGGTTAAAAAGTTTTTACTACTACATTTCTGGATCAGACGTGGAATTAACGTGATTATAAGTCCCTTTAAAAGGATAGTTATGCGTTAGAATGAAAAACAATTATACTAAGAAGCGCAGTTACTAAATTATTGTTTACCATCTCTAACGATTTTATAATAATAGAATGACTAAAATGTTACCTAAAAGTTCGTTCTTATGAAGTGGTTTAAAAGTGTCGGAGTTCGAGTCTCAATGCGACCGAAACGAATCTTTTTCGTATAATTGAACGTTTATAAATAATGGGGTATATTTCAATTGAATGGTAAATCCTTGCGACCAAAAATTGTTAAATTAATTACAACTAGAATCGGTCACATGAGGAGTAAAGGATAATAATGAAGATTTATAAGCAAGAAAGGAGTAAAGTAAGATAAGAAGTATAAAAACACAACA # Right flank : GAGTAGTAGCTATAAGCACTAAATTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 50-1095 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJL01000003.1 Sulfolobus islandicus M.16.12 contig003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 50 25 100.0 39 ......................... TTTTCTATGAGAGAACCATTTTAAGAACCTAGATTACGT 114 25 100.0 38 ......................... AAAGAGTCTCTTCTCATCATTGATCCCCCTAGAACTTT 177 25 100.0 40 ......................... TTCTCATATTGGACTAGGCTAATCTTCTGGGTTCTCTGCT 242 25 100.0 38 ......................... ACCTCGGTGCGACATTGAAAACATAATCTTTGTTACTC 305 25 100.0 36 ......................... ACAACTCTTTATTTATACCGTTAAACGCGAATTTGG 366 25 100.0 38 ......................... GAGACTTCTACATCTTGTCCGCTCATCTGTGTTCTTTT 429 25 100.0 38 ......................... AAATTATATGGCCTGAAGTGGGTGTTAAGTACGACAAT 492 25 96.0 40 ........................A GGAGGTTGGACGGCTAACGAATATCCCGCATTAGGCGGAT 557 25 100.0 40 ......................... TTCAAACTCCGGGTCTGTCTCTTCGTAATTAATTTTCTTT 622 25 100.0 36 ......................... TCTAATTTGAATGTTATAACCCTGTTCATAAGTATT 683 25 100.0 44 ......................... GAACTATTGCACCTTTATAAGTATCCTCTTCTTCAGTTTTCTTA 752 25 100.0 39 ......................... AATACATTAGCTATACTTGGATATCCAAGATTTATACCT 816 25 100.0 40 ......................... CTTTTGCGTAATAAATTTATACGTCCAATCGGGCATTCTT 881 25 100.0 39 ......................... AAGACTTCTTCAGTCATTATTTTTCACCTTAGCAAATTC 945 25 100.0 36 ......................... CTAATCTAGCTTATTTGAACGCACTGGAAATATTCC 1006 25 100.0 40 ......................... AACATGCTCAAAGCAAGTGATGGGATGATTACTAACCTAC 1071 25 88.0 0 ...C.....C....C.......... | ========== ====== ====== ====== ========================= ============================================ ================== 17 25 99.1 39 GATTAATCCTAAAAGGAATTGAAAG # Left flank : GGAATTGAAAGACCTCATTATCATAAGTATTCTGAGCTAAGCTATTCATG # Right flank : GTAATAAACGATTGTTTGACGACATTATTTACAGGGAGTGTTCTCGTGCAGTCATCTTATTCGAGAACATATAGTAAAATTATATCAGATTTTGTCTAATATTCTGTACTCCCTTCCGGTAAGCCTCATTCAAGGGAGATGACTCCCTTGAATAGATTACGGGATAAATGACGTTCAACAAGGCAAGACTATAATCAACCATCCTCCCACTCCTGCTCACAGCCCTAGTATCCCTAGCTAACCTAGCCAAGTGGGCCCTACAGTAAGAGTTATAACTCTCCACGGTGTGAGTGTACTTTTTGCTCGCAACATGATTATCAAGAACTTGATAAACAGAGTAATCATCAGTATAATTAACCTCACTCTTAGGCAGAGAACTCAACAGAAAGCTGAAAGTCTTGTAATCTCTATTACCCGTAGTAAAGAAGGGTAGACCATCAACCAAAGCATTCCAAATCTACACCTCTTGGGACCATGTCTAACTCTAAGGTAAGTCCAAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 23263-19309 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJL01000003.1 Sulfolobus islandicus M.16.12 contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 23262 24 100.0 41 ........................ ATAATATCCCTTCTTCCTAATTGTAGCTACTACTTTAGCTC 23197 24 100.0 40 ........................ ACGAAACAATTTGATTTGTATACTGCAGTTGCAGATTATG 23133 24 100.0 40 ........................ GGGCTATAATCGGGTTTTCCACAATGTGCCATAGCAATTA 23069 24 100.0 41 ........................ ATACAACTATAGCGTCTCAAGTCTTTAATAATCAACAATTA 23004 24 100.0 39 ........................ CAACAATATCTTCAAGCACTCAATTCATTGGGCTCGTCA 22941 24 100.0 38 ........................ TCGCTACCGGTACTGTCTCTTTTGATAACTCGTCTCTT 22879 24 100.0 41 ........................ CTCCACTTAGCGATTGCTACTGGGAACCACGATGCCGTGGT 22814 24 100.0 39 ........................ TATTGATCTTCTTTCGTGCAATATCATAGTTAAAATTAT 22751 24 100.0 40 ........................ TTTTTGTTGCACCGATGGAATTTGAAATACATTCATTATT 22687 24 100.0 40 ........................ TTCAAGGAGATGGTTTTATGAAAATTGCCGATAAGGTCAA 22623 24 100.0 39 ........................ TAAAGCTTGTGACCCGCCTACAAGCTTAGCTGCATATGA 22560 24 100.0 38 ........................ ACAGTAGTAAAGTTCTGGAATTTTGTTGATGCTATAAG 22498 24 100.0 40 ........................ CTCCTACCCTGAGCCCTGATTCCGCCAACAATAAGAAGAA 22434 24 100.0 39 ........................ TCAACCTTTTGTAATCTTGTCATGTTGTTGTATACAAAT 22371 24 100.0 38 ........................ ACTTGGAGGCGGTGGAGATGGCGGAGGTGATATTATGG 22309 24 100.0 37 ........................ AAACTCTACTACATTAATTCCGTCATTTCTCACCTTT 22248 24 100.0 39 ........................ ATTACTAGGATATCCTTAGGGACAATTATCTTGATTGTT 22185 24 100.0 38 ........................ ACGCCTACTAGAATTCCCATTATAAAAGCAATCAAAAG 22123 24 100.0 41 ........................ TTTTTGATTCACTCATGATTCATATATGAATCACAAATATT 22058 24 100.0 40 ........................ CATTCCCGTCGATTAACCTTAGCCAGAAACGGTAGTTCGG 21994 24 100.0 39 ........................ CGTGAATCTATCATTACAAATACGTCAGTTAGAATAATG 21931 24 100.0 42 ........................ GTCTTCTTTTTGCCCACTTTTTTTACTTCAAAGCCAACTTCC 21865 24 100.0 40 ........................ AATATTCCTTAAATAGTCTTGTTAAATCCATAAGGTTTTG 21801 24 100.0 41 ........................ AATACTTCATCAATAAGTAGACCACTATGGTCGAGTGGCGT 21736 24 100.0 39 ........................ AAAAATCGTTACAAGGGTGGGCGGATGGACGTCGTTAAA G [21716] 21672 24 100.0 41 ........................ CATAATTACGGCATACGCGTATTTTTGATAAGCATTAGCCT 21607 24 100.0 36 ........................ GCTTATTAGCATCTCTTAACCATCTTATCAAACTCA 21547 24 100.0 39 ........................ ACATCAAAAAATAGATACCCCAATCCTACGGTGTATCTA 21484 24 100.0 40 ........................ CCTGCAGTTCCAGTCGCAAGAGTCTCTTCTACTACAACAT 21420 24 100.0 41 ........................ ACGCTAAGACCAGTTACAATTGCGAATAATGTAATTGTAGT 21355 24 100.0 40 ........................ TATACTTCGTTGTACAAGTAATTTTGCCCTGGCGATGAAG 21291 24 100.0 37 ........................ GCGAATAGAGCATTAGGGTTTTTGACAACGTAAGGTT 21230 24 100.0 39 ........................ TGTTGTTCTAAAAGTCTCCCTAAGATGTTATCGGCAAAT 21167 24 100.0 40 ........................ ATCAAGTTGCAAACTCATTGTTATTATCAAGTCCAAATGT 21103 24 100.0 40 ........................ AACAACGCTAAGGAAGCTATATTAATCACAGTAGGAATTA 21039 24 100.0 44 ........................ GATCGATCTAAAGTATTATGCAACATAAGTAGCAGTAACATCTG 20971 24 100.0 38 ........................ TCTTTATACAAATTATACTCTTCAGACTGAAATAACGC 20909 24 100.0 40 ........................ CTAGGTAGGAAGTTGGCGGGCGTAATAATGATAAGATCGA 20845 24 100.0 37 ........................ TTCACGACCACGCTAACCGTCGCACTACCGCTACTAG 20784 24 100.0 40 ........................ CCAGCGTCTTTTACTTTCCACCAGCTTCCAATTGATTGAA 20720 24 100.0 40 ........................ GGCAACTTTGTATATGCTGCCACACCTGATCTAGAATAGG 20656 24 100.0 41 ........................ AACTTTATCGACCTTTTTTCTTATTTTTGTAATAAAAATTC 20591 24 100.0 41 ........................ ATGAATTGAATAAGAACGTAAAAATTAACGCCGTAAACCCT 20526 24 100.0 43 ........................ TGGGGAACACAACCGTTCGAATACAAGGGATTTTATGACACAG 20459 24 100.0 37 ........................ TTTTCACTAATTCTTAAGAAAAGCGGAATGTCCCACA 20398 24 100.0 40 ........................ TTTAACTCTAGAATTCCTACACTCGTACTTACGTTTGTCT 20334 24 100.0 37 ........................ AAAGTACGCCGACCCGAACCTCAGGCTGGACGTAGAG 20273 24 100.0 39 ........................ TTAATTTCATCCTCTTTAGCTCTAATAGCCCATAAAATA 20210 24 100.0 41 ........................ AATAAGATATACAGTGTTGGGTAGAAGCCAAAGAAGCTGGT 20145 24 100.0 39 ........................ ACTATCAATCGTCAGCTTCTGTTCTTTCTGAATTTCTTC 20082 24 100.0 39 ........................ TCTGGGTAAACCTTTATTTCTCCCCGCCACTACTTTTTA C [20077] 20018 24 100.0 38 ........................ GATCTTTGGATGCCAAGTAATAAAAGGGCTGGTATCGA 19956 24 100.0 39 ........................ AATACAATAATCCTCCCTCGCCTTTTCATCCTTTTTCCA 19893 24 100.0 36 ........................ GTTATACCTCAGCACGCTGGAAGCTTGCAACTCCAT 19833 24 100.0 40 ........................ AATGGCGAAACTGACAATGAAGCAGAATGCTGTACTGTAT 19769 24 100.0 38 ........................ ATGTCAAAACAAAGTAATAATACTTGGGTAGCGACCAT 19707 24 100.0 39 ........................ TATTATAACTTATTACCATCTGAGAAGCACTAAATATTA 19644 24 100.0 37 ........................ TATACCTTCAATTAAATCGACAGTTGAAATGATTAAG 19583 24 100.0 38 ........................ TTAAACACGTATAAAGTCTCATGACTGTTACCAGTGCC 19521 24 100.0 39 ........................ GTCTTTATTAAAGTCCCTAGCTCTCTCCCTGCAGCTCCT 19458 24 100.0 39 ........................ TGGAATTATAAATGGCTCATCCTCGCAGGTGCGGACGAC 19395 24 95.8 39 ........T............... ATCATTATTATAGCCCCGCTATCGAAAGTAGCATTAGGT 19332 24 95.8 0 ........T............... | ========== ====== ====== ====== ======================== ============================================ ================== 63 24 99.9 39 GATAATCTACTATAGAATTGAAAG # Left flank : CTTTATTGGGGGCATATGATAGTTCCATCCCCGGAGCTCCTCTTCAATAGGGTCTGAAGCCCTATATGAGTGGAGCCTTCGTAACTGTCTAATTATCTGCGACCTCATAATATAATAGTAGTTGAAAAATCTAAAAACCGTTTTAAGGAGTGGGGTAAAGACATTCCCAAGTTTACTAGGGATTAGCCTAGAATTCTGAGCGTCATCTCTATATAAAGAGTAATAATAAGATTAGGGAAAGAGATTACTCTACTGTTAATGGAGTTGTTTTGTGGTTTTGTATTTTTTGTCCCGTTTTTGTAAGTGGTTTTTCTTTTGCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGTTAATAAACCCTCA # Right flank : TATACTATATTCTATGACTTGTTTGAAATCTAAATCTAGGGAAGCCGTATGGGAAAAGACGAAGTCCTAATAGATATAAGTACGTTTATATCGAATAAGAGAAGAAAGGGGAAAGTTAGTGTAGTAACGCTAATAGAAATTATGGAATGGGCTTTAAGGAAGTATAATGAACATAGTAAAAAAGGTGATAAATTGAGGGCTTTAGGTTACCTAAATCTCATAACCTCACTTCCGCTAACTGTTGATGAAGTAATTGAGATAAGAGGTGATGAAATAAGAGATCTAGTGTATTACGTAATTGAGAAAAATTTAGATCCTACTGATGCTTATTTTGTAGTTTTAAGCAAGAGGTTTAAGATGCCTATAATTACAACGGATAAGGATTTCGAAAGGATTAAGGATGAAATAGAAGTTATATACCCATGAAATAACGGTTATGTAAAATCTATGCTTTGTGGGCTATATTTTATGATAGCCAACTAGAAGCATAGAGGTATAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 27857-30984 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHJL01000003.1 Sulfolobus islandicus M.16.12 contig003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 27857 24 100.0 38 ........................ GCTCAAATTGCCTATAGTTATGGGCTGAACGGGGTTAA 27919 24 100.0 40 ........................ ACTGAGAGATACGCATCTAACAACAACTCTTCTAACTTAT 27983 24 100.0 40 ........................ TATAAATATTTCTCTCTCACTAACGTGCTTTCGGATTTAA 28047 24 100.0 38 ........................ GGTATATCGCTGAGAATATCGTGGCGGATACTCAGACC 28109 24 100.0 39 ........................ ACTTCTACATCTTCGTGGAGACGCTGGACCCTGCATACC 28172 24 100.0 41 ........................ CCCCCCGTAGTCGCTCAGGACAACGATCTTCATTAACTTCA 28237 24 100.0 41 ........................ TTAGTGGGGGTTCATCCCCCACACCCCCAATTCCATTTTTC 28302 24 100.0 37 ........................ TATTTTTCTAGCTTCTTCTTGAAGTCCTCAAACTCTA 28363 24 100.0 38 ........................ TGTCTTCCACTTCTACTTGTGTGCAATATTGATTTTAT 28425 24 100.0 41 ........................ ACACTAAGTGAACCCAGCTGTGATTCAAGTTCAATAGTACC 28490 24 100.0 38 ........................ CACCCGCAGCTGCAAGCACAACTAGCAACAAAACTAAG 28552 24 100.0 39 ........................ AGAAGATTAGCCTAATTTTAGCCTAATTTCTCATGGCCA 28615 24 100.0 42 ........................ TTTTATTTTATAACATCAGCTTCTTCTTCTTCATCATACTCT 28681 24 100.0 37 ........................ ATATATATAACTAAGAATAACTTCATAGAATATCAAG 28742 24 100.0 39 ........................ TACGATATAGTTTACATATACGCTGACCTTAAATTGTAT 28805 24 95.8 40 .......................A TAGTTGAAGTACTTTCTATTCTTTTTACCGCTTGTCCAAA 28869 24 100.0 38 ........................ AAATACCCCAATTGTAATTGCCATTTGCTAAATTACAA 28931 24 100.0 41 ........................ TTTGAGTAGTTACAGCGTGAAAAGGTAAGGAATAAGGTATA 28996 24 100.0 37 ........................ ATCCCTTCATCGTAATAATAAATTATAAGATCGTCGA 29057 24 100.0 39 ........................ ATCGTGATCCCAGCGACGAAATACGGCTTCGTCTTCTCG 29120 24 100.0 36 ........................ CAAATATGTCATCAAGTATACTACGTAATTCATTTT 29180 24 100.0 38 ........................ TTTGAATTTTCTCGCGAGGAATGATATCTGAACAGCTG 29242 24 100.0 41 ........................ AACGAATAAGAAGCGTTTAGCATAACATAATCGGCATTAAT 29307 24 100.0 42 ........................ GTAACGGAAAGGAGGGAGAGGAATCTACTCAACAAAACGAGA 29373 24 100.0 41 ........................ ACGGCACAGGTAATCTTAATAGATATACGATAGGATTAGGG 29438 24 100.0 42 ........................ ACTATATAAATTTGAAAACGGGAAAGAGAGAGAAAGATTTAT 29504 24 100.0 40 ........................ CTAATCCGTGTATCACCTGCAGGGTTTGGTGTCTCCCTGC 29568 24 100.0 39 ........................ GAATCTTGACCAAATGTTCCACTAGTCAGTAGTGGTGGT 29631 24 100.0 39 ........................ AGTTTGTTGAGTGAGTTTATGCACTGATCTACTGTAAGT 29694 24 100.0 40 ........................ CTGCAATCTTAGATTACATTAATAATCTCTTAAAAGAAAA 29758 24 100.0 39 ........................ GTTTCCAGTTCGATTAATGCCCTTGATTTAAGGTATTAT 29821 24 100.0 41 ........................ CTGTCCTTTACATATCTGTCTTAGGATTTCCATAGGTCCTT 29886 24 100.0 40 ........................ GCCGCTCGGAGCTCCCGTTACAAAAAGATCTATCAGTTTA 29950 24 100.0 39 ........................ ATATATAGTGATTTTAGGCTAGAGGGTGAAGGCGAATAT 30013 24 100.0 40 ........................ ATTCCCGTTAAGATTATACGCTCCTTATCCATACTCCTTC 30077 24 100.0 40 ........................ TTAATCAGCTTAGTAGTTCAAGACTTAGAAGAATAGCTCT 30141 24 100.0 39 ........................ TGTGACTTGATCTCCTCCAATAGTCTATACATATCGTCT 30204 24 100.0 37 ........................ ATCTAATAGATATTTAAGAGACACATTTTTCTTCCTC 30265 24 100.0 39 ........................ CACGTGGTCTGGAGGGTGTGTATCCAGCAATCATTCTTT 30328 24 100.0 43 ........................ AAGGTGACATTACCTCAACTAACATCTTAGAGCTACTAACACC 30395 24 100.0 38 ........................ ATGCGAATTTGGTTTGAAAAAACACTTTTGTTACCTTT 30457 24 100.0 38 ........................ TGAACTGGAGGATGAAATATATGAGCTAGATCATTATG 30519 24 100.0 42 ........................ AGGACGTAATTCTACAATTGTTCTAGTCACCCCTTGTGGCGG 30585 24 100.0 36 ........................ CTTGTAGACACGCTGGGACTCCCGCTGCTTGTAACA 30645 24 100.0 39 ........................ AAAAATGGTACGTGACGTGGGATTGAAAATGTATAAATG 30708 24 100.0 39 ........................ CCGTAGATGCTATGAGTGAAAGCACTGTGATTGCCGTAG 30771 24 100.0 40 ........................ TCCCCCCGTACCCCCTAGGGGTCTCTTCTTCTTTTTTATA 30835 24 100.0 39 ........................ ATAAGTTGATCAGTATCCTTGTAACCACTATTTATCAAT 30898 24 100.0 39 ........................ CTGGTAATAGCGTGAACTGAATTCCATTTCTAGTTCCTA 30961 24 95.8 0 .......................T | ========== ====== ====== ====== ======================== =========================================== ================== 50 24 99.8 39 GATAATCTACTATAGAATTGAAAG # Left flank : ATCTATTTCATAAACTTTTGGAAGAGGGTAGTTTAACCTTGAAGTTTGAGCTCTTAAGCTATCTATTGCAGTCCTAGTTCCAGAGATAATTGGAGAGGGAACAACGATTACAAGATTATCTTCTTTCTGTGCAGAAGTTTCGTTTAGAAGTCTAAGCAGAAAAGTTTCATTAAATCCCATGGTCACAAAATATGATTTCATATCATAAAATTGGTATTACCAACTCATAAATCTTTCTATAACTTAAGAGCTTGTAGCTGAGGGAGTTGTTTTGTGGTTTTGTATTTTTGTCCCGTTTTTGTAAGTGGTTTTCTTTTGCGTTTTATGGAGGGGAGGTAGGGTGTTGTCCTAAAATAATTACCTTTATGAAGAATGCCTTATTATCCCGGGTTTAGTAGGGAGTGAAAGGATGAGGAGAAAAATTGAAAAGATAATACAGAGTAAAGCTTATAAATAACGAAGAGAGAACAAGATATTAGATAAAAGTTAATAAACCCTCA # Right flank : TACTATAATGTAAGTTGGATTTTGTAAGTAGAGTCTTTATTTACAATAGTTACAATAGAGTAAGAGGACTAGTTTTAGCTTAAGATGTTGAAAATGAGCGACTTAATGGAAGCAACTAGATATATTTCGTATTAGCAAATATCATTTTTCTTTCGCATTTATTAATAAAAGTATATAAAAATCTTGGTGAATTTAGTTGACGTAATACGAGATACTCTTTTCCCTTAACAAGAAAAATTTAATACCTCATTTTTCATATTTAGGGTATGATACTAATCTTAACACTTGGATTCGACGAGAAGTTTCAGTACCGCGCATTAATGAGACAAGGCAAGAGTATTGAAAAGGTCATTGTTGTTGGAGGGTTCAAGGAGGAGAAGGCTAAAAAAGCGTTAGAATCGCTCACTAATTTTCTAAAAACAGTTAACGTTCCTTATGAGACTATTGAAGTTGACCCTAGAGACTTTGAAGATATTGTTGAGAAAGTTGGCAAGGTTATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //