Array 1 25716-27974 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFAQ01000015.1 Clostridium autoethanogenum strain H21-9 Contig_015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================================================ ================== 25716 30 100.0 36 .............................. TATACAAGAGATATGTTAGAAAAATATGAGTATGAG 25782 30 100.0 36 .............................. AAGATAAGTAAGATTCTTGATTTTTAATTTTATTAA 25848 30 100.0 37 .............................. TAACTCAGGCAAAACCTACAGCAAAGAAGAGCTGCAA 25915 30 100.0 35 .............................. TAACAACTACAAGTGATTCTTATGGAGATCCTTCA 25980 30 100.0 36 .............................. CATTCTTTCGGCTCCTTCAAGGTTTGTCGAACTATT 26046 30 100.0 35 .............................. CTTGTAGATGCTATTGGCTTATTAGATGCTCTTAG 26111 30 100.0 36 .............................. TTCCTACTGGAAATTTTAAATAGCCATGTAAGTAGC 26177 30 100.0 38 .............................. ACAAAAATAGTTGTAAATAAGCAAGGAGTACAATTTGC 26245 30 100.0 36 .............................. CAAATTCTCTAAGTTCTATAGTTGGAAGCATGGTAA 26311 30 100.0 35 .............................. AAAGAATAGTACATATTTAATTTTAATAATAAAAA 26376 30 100.0 37 .............................. TTGCCTCATTTCTATTCATTTTATGTAACTAATTATA 26443 30 100.0 36 .............................. CTTTTTTAACAGTGATGGGGTGGACTTGTACATTCT 26509 30 100.0 39 .............................. CAAAAAGTTAGACAAAAAGTTAGACAAAGTAAATGTTTA 26578 30 100.0 37 .............................. ATATATAAAACAATATCCAAAAAAAATGTATTTCACG 26645 30 100.0 36 .............................. AACTTAGGAGCCAATCAGATGAAATATGATAGGTCT 26711 30 100.0 37 .............................. CTCATCCAGGAAGCATGATAACTGAAGATACAACTCA 26778 30 100.0 36 .............................. AGCATTTTATATTAGAACTAGTAAAAGATAAATCAT 26844 30 100.0 38 .............................. TTGTAATTCTCATGGCTTCTTGCCAGAAGAAAGTTTAA 26912 30 100.0 37 .............................. TGGGCATGAATTTAGGAGAAGATACAAAAAACAAAGC 26979 30 100.0 38 .............................. TTGAAAAATATGGTGACAATCCAAGTGTGATAAATGGA 27047 30 100.0 39 .............................. ATTGATTTGAGCTGTTTTGAGGGTCTTCTTCAAATGCTG 27116 30 100.0 37 .............................. TAGCAATCAACTTTGCTTGACCTTCCAAGAATTTAAA 27183 30 100.0 36 .............................. AGTTTTAAAGTTCCGCTTGCTGAATACCCTAATATT 27249 30 100.0 36 .............................. CAGTTCACAACTATATTTACACTCTTACTGTCATTA 27315 30 100.0 35 .............................. TATTTCTATGGTGATATTTGTAGTTCAACTTGGGA 27380 30 100.0 37 .............................. CATATACGCAATCTTTACAGTTGCTTTCCATATCACG 27447 30 100.0 37 .............................. CAATAAATTTGATAACTATAAATGTAATAATCATGGC 27514 30 100.0 37 .............................. GCTGCAGGCAAAGTATATAACATAATTGTGCAGGGTG 27581 30 90.0 93 .......................C.T...T AAAAGTGCAAAGTACAAATAATAGAGAATAGATAATTAAGACTTTCAGGTTAGCTGAAAATTAACCATATTTGATATTTGAACTTTGTTATTT 27704 30 80.0 160 .A......GA..........A....A...A AGTGATAAGCAACAAGGTTATAATAATTTTATATACAACGATTAATGTTGTTTACAATTATGACAAGTAAAGCATAGCCTAAAAAAGCTTTAAAGTACCAAAAAAGTATTGCATTTACATGGACATAATGTTAAAATTTATACGTAAAGTAAAAATGTTC G [27728] 27895 30 80.0 21 AAA.............CA...........T CTATAAGTTTAGGATGTACAT Deletion [27946] 27946 29 73.3 0 .........A......-..A.G.G...TTA | ========== ====== ====== ====== ============================== ================================================================================================================================================================ ================== 32 30 97.6 42 GTTTTTAGATTACCTATGAGGAATTGAAAC # Left flank : ATAGTTGTATACAGTACTTTTAAAAATTATGTAGGAAATAAAACTTATTATTATAATCCTTTAGAGCGTGAGTTTAGTGAACTTATAAGAAAAAATTTAATACATAAGTATGAAGCTTATTATGGCAAACTGCCCTTAGAAGATGATTTTTCAATAAGTCCAATTAATAAAGAAAGGCTGAAACAGAGGGTGGTTATGTATAAAGGGTATGTGATAAAGGGCTGGGATGGAGAGTTTTTGATTCAAGGTTCAAAGGAACTTATGGATATAGCCTATAATGCGGGCATTGGTTCGAAAAATTCTCAAGGATTTGGATGTATTGAGATAAAAAAATAGGAAAAGATTAAATGATGTTTTTTCGTCGACCTCCAGTAGTGTAAAAAATCTGGGAGGTCGACGAAAACTATTTTTGAGTGAAATCAATGCTTAAGAGGGATTGACCTAAAAAATGTAAGAAGTTGACCTTGGAGTGAATGTAGGTGTATTCTATATTCGATGGG # Right flank : ATTTTTTATTTTAGTAAGGGGGATGTTTTTGAGAAAAATATTATATTACTATAAGTTTAATATGTACATAAAATTTTTATTTGAAACACCTTGCTATAGAAAACGATTTTATTCAATTATTTATATGTGAAAAAACAATAGAAAGGAGTGAAAAATTATGCTTGAAGGTATAATCCAAATAGGAAATTCAATGCTCTCTGATAGAGGAGATATGCTTTCCAACTTAATTAAAGAGGTTCCATCCAAAAACAGAAAGGAAAAACAAATGCATGTATTGAAAATTTGTTTTAACACACAAAAGGATGAATTTAAATTAGATCCTAAAGAAGAAATTGGTAGCGGCACAGCTTTAAAGTATGCATTTATAGGTTCTGCGGATGGACCAGCATCCCCACAATGGTTTGCAACGAGTAATTCGTATTTATATCATATAACCGAAACTTTAAGCAATTTGACTAAAGTAGATTTGGGGAATGAATTAAATGAAAAGATAAAGATCA # Questionable array : NO Score: 8.59 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.54, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGATTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 35956-37908 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFAQ01000015.1 Clostridium autoethanogenum strain H21-9 Contig_015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 35956 30 100.0 37 .............................. TCATTTCCAATATTGGCAGCCAACTCATTGGAACTCC 36023 30 100.0 37 .............................. TGCTATGGCAGAATTGAAGGTTTAGGCCGTAAGCTCC 36090 30 100.0 38 .............................. ATACTTCACAGCAGTTTGTTGGAATGAAATTAGACCAA 36158 30 100.0 36 .............................. CATATAGATTCAACTAAAATTGCATATACTGGACAA 36224 30 100.0 36 .............................. TTGAAGCTGTAAAAGCATTAGACAAGGGAAAAACAA 36290 30 100.0 36 .............................. CAGAATAAAGTTCTAAATTGGTATGGAGTATCTATG 36356 30 100.0 38 .............................. CTGGAGATGTTACACCAGTTAAACCTAGTAAGCTTGCA 36424 30 100.0 37 .............................. ACAATCCTTTGTGCCTCTGCTTCATCCCAGTAATAAT 36491 30 100.0 37 .............................. TTAGAATGGGCCCAAGAATATAATATACCCTATAAAA 36558 30 100.0 37 .............................. TAACTATGGCATGTTGCGAACCACCTCGATAAAATTT 36625 30 100.0 36 .............................. TAATTTTTGCAGGATTCGCTGACTGGAATATGCCAC 36691 30 100.0 36 .............................. ATATTTTCAATGTAATAAAAGCTAATCCAATCGTAA 36757 30 100.0 36 .............................. AAAAATAAACATGTAACTCTAAGATTTACATTTGCT 36823 30 100.0 37 .............................. CATCAATTGAAACAAGTATAATAACATCTGGAATAAA 36890 30 100.0 36 .............................. ACCAATTTTCATTAACATTAAAGACACTACAAATTT 36956 30 100.0 36 .............................. GCAGTGAAACTTATGAAAATGATACGAAACTAAACC 37022 30 100.0 36 .............................. CAATATTCATAACTTCCATGTTATATATAGCTTTTA 37088 30 100.0 36 .............................. CAATATAAGTATGAGATGGTATACAGAAGAGAGGGC 37154 30 100.0 36 .............................. CTGAAAAAATAGATATAAAATCTAATGTAGGTGTAA 37220 30 100.0 37 .............................. ATTGCTATGGCAGGAGATACAATCACAATACCAAATA 37287 30 100.0 38 .............................. TCTTATTGGGTGAAGGGGGTGACTATGGAACAGCTACA 37355 30 100.0 36 .............................. CACCCTGCCAAGAAAGACTATGTAAATAATCATAAA 37421 30 100.0 35 .............................. AAAGTAGTTTGGAGGTATTGAAACCATATTTGGCA 37486 30 100.0 35 .............................. AATCACCCATACCGCCTTTACACTGCTCGTCATAA 37551 30 100.0 36 .............................. CTGAAAGATCTAAAAATATATCTTCCAGGATAGAAG 37617 30 100.0 35 .............................. CCGTTTGCAAAGTGATAAAATCCTAGTTTAATTCC 37682 30 100.0 35 .............................. TCGGGTTTGCAGGGAACAACTGCCACCTCCTAGGG 37747 30 100.0 35 .............................. TTTCTTTTATTGTTCTTTTACATATAACAAGCCAC 37812 30 100.0 36 .............................. ATTGGTTCAGATCAATTTAAACAAGATGTGTTAGGA 37878 30 93.3 0 .........................A...G | G [37905] ========== ====== ====== ====== ============================== ====================================== ================== 30 30 99.8 36 GTTTTTAGAGTACCTATAAGGAATTGAAAC # Left flank : AAACTTCAAAAATATATAACTGAAGATGAACCATATAATGGTTTTGTTGCGAGGTGGTAAGCAGTGTTTGTAATACTTGTTTATGATTTTGGGGAGAAACGTGTTGGACGTGCTCTCAAAAAATGCAGAAAATATTTAACCTGGGTTCAAAATTCTGTTTTTGAAGGTGACATAAGTGCAGCTAATTTAAAAAAGATAAAGTGTGAGCTTTCTGATATTATGGTAAAAGGTGAGGATTCGGTAATAATATATAGTTTTAAAAGTACCAGGTATTCTAATAGAGAAGTACTTGGAGTGTCAAAAAATCAACAGGATATATTTTTATAAAATGTATCGGTTAGTTTTATGTTGTCGACCTTGAGTAGTGTAAAAAACTCCAGGGGTCGACGATTTTTATGTTTGCAGGCAATTAGCAGTTTGAGATTGATTTTTATCATTTTTACGGAAGTTTTCTCAAATATTGCATTTTTATAAATGCTGATGTATTCTATACTTAATGG # Right flank : GTTAATTAGTGGTAAGTTAACAGTTGAGGAAAGTATAGAGTTGAAATAACAAAGAATAAACAATAATTGATATTTGGGCTTTTAACTTTGTTATTTATTTTTAAATAGTCAAGAATTAGATTTTTAAAGTATTATAATCTATTAGTTGTAATGGGTTATGATACTTTTTATTTTTATTCTTATATGCAATAAAAAAGAACATAAGTTTGTATAGAATTGTAATTCATGGCAAAACTAATACTAAATTTTATCCGATGGCTACCAGCCGTAATACCCCCATCGCACACAGCGAAAGCGACTGTCACCTGGGATATCTGCTTTTCTTATAAAGTGGGGGATAACGGCTGCTACGCCCCTGGATAACGATTTCCCCTAAAGGATAACGCCTTCTAAGTGCTAAAGCACTAAGAATCCTGTTAATAAGTTTCAGATGGAGAAAAGAACTCCACCTGAAACCAAGAACTCTGTTTATATTTTAATGGAAAGAGATGATTGCTGTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 33603-35213 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFAQ01000004.1 Clostridium autoethanogenum strain H21-9 Contig_004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 33603 30 100.0 37 .............................. TTGGCCTAGGCTATGTCCTAATTTACCTGTAGCCATT 33670 30 100.0 37 .............................. CAATTTAAAAAAGGGCAGAGAAAATGGGAATGATAAC 33737 30 100.0 36 .............................. ATATTGTTTTAAGTTCCCTATATTATTTGTATGAAA 33803 30 100.0 36 .............................. AGAACGTTCCGATAGCCGTAAGTAAGACAGATAATA 33869 30 100.0 36 .............................. TTAAAGATTATGTATGCAGGAGGGAACTACAAACAA 33935 30 100.0 37 .............................. CATTACTAAGATAAGAAAAAGTGGTTATACGTCAAAC 34002 30 100.0 35 .............................. GCTAGTAATGGAGATATAGCAGGAGTAGGATTAAC 34067 30 100.0 36 .............................. GCAGATACAAAGAAGAAGGATTCCCTTGGGCAAGAA 34133 30 100.0 36 .............................. TTTAATTGTTGAGCTTGTCCTCGAGATTTATTTATA 34199 30 100.0 36 .............................. TCATTTTGGTCCCGAACTTCCCAACAGCGATCCACT 34265 30 100.0 36 .............................. AGTGCTAAGTGTTAGGAGGTGTAGTATGAGGTCTAA 34331 30 100.0 36 .............................. CCCAAAATGAAAGTTTCAAGCCGGGCAAAAAGAAGG 34397 30 100.0 35 .............................. GCAAAGTCTCAATCAGAGGCTTGTGTGGGAACCTA 34462 30 100.0 36 .............................. TTATAAAGTTGAAAAATGGAGGGATGCTGTAATATC 34528 30 100.0 36 .............................. AAAAACAAGATGCAGCAGACACGGTAAAAGAGTGTA 34594 30 100.0 36 .............................. TTAATTATTACCTTCTTTTGCTTCAAAATTATCACA 34660 30 100.0 35 .............................. CGTTATAAGTGGGAGAGAAAAAGTCTGCATACAAA 34725 30 100.0 35 .............................. GATTATATATTAAAATATGATGCAACTAAAGAAAC 34790 30 100.0 35 .............................. CCCAAAATGAATCAAATATTGCGAAACGTTTTTCA 34855 30 100.0 36 .............................. TATTTTAAAAGGTATTGTAATATGTGTATTTCAATT 34921 30 100.0 36 .............................. ACTGGGGCTATCCTTTAGTAAGTAAAGTGGTAGCTA 34987 30 100.0 35 .............................. GATAAATTAACTTATAATCATTGGGATTCTTATCC 35052 30 100.0 36 .............................. GTATTGCTATAATGAAATTCCAATGTCCTATACTTT 35118 30 100.0 36 .............................. TTTTCTTACTATTTGCGAATACCTTCTATTAAATGC 35184 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 100.0 36 ATTTAAATACATCTCATGTTGAGGTTCAAC # Left flank : CTTATAAGCAAACTCCATCTGAACCTAAGAATCACTTGATAGTCCAATTCCGTGCTCCTCCTAATATATATTTTTAGGATTGTGCAGAGGCTATTTGTATTTGTGCAATAGCCCCTGCTATGCACACACAATCAATGTTAACACAAAAATGCTCCTTTCTTTAAGCTCTTATATATAGTATATGTATCCATTTTTACTCACTTATTATTCTTTTTTGTTCTTTTTGCAATACCAATTAGATAGCATTATATAAAAATCCTGTTCTTCTTTTATTTTTGCATTTTTAAATAATTCTTTTAAGTCCCAATACGAATATTTTAAGAATTGTTCATATAAATTATTTTGTTTATTTGTTTTCTCTATACTAATTCCTCTAACAAATAATGCTTTTATTATATTATATCCTAATACACCTCTTATATAAATAATTCTCTGGAAGTGTACATCTTATGTTAAGGTTCAATTAAAGAGACTGTTAAAAAATGCATACAGAGAAATTT # Right flank : CCACAGTAAAATAGCCATTCCTTATTTTCATTATAACCCTAAAACCCTTAATAATAAAGGCATCAACTGAAAATTTTCCAACCGTTTTTCAATTTTCATAAACTCAGCCAAAAAAGTGCCTCAATTCATTACATATCAATGCATTGAAGCACCTTCTATCTTCAAAGAGGTTGGAAAAATCAAAGTATTAAATCTTCAGTATTATTTTCATTTATCCCTAAAGTATCCTCCTCAAAACAGCTGTCATTCATAAGCTTTATTATTGTGACAAAATCCTTATCCTTTATAATCTTATTTAATTCACTCTTCAACTTTATCATTTTAGAAGTCGTTATAGCCCCTCTAAAAACAGAATTCTGATGGTGGTGGAAATATTTTTTGCATACCTTAAATACCTTATTTACCCTTTTCTCATTTACATCATAAAATACAAAAGCATAGTTGAAATTAAAATTTTTTCCCATAAAGCTCCTCCAATTATTACATCATATTTTTCAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTGAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 44945-44317 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFAQ01000004.1 Clostridium autoethanogenum strain H21-9 Contig_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 44944 30 100.0 37 .............................. AAATTAACATATGTTGCAGGATCTTGTCCTGGCAAAC 44877 30 100.0 36 .............................. TCATTTTTGGGGGATGAGCCAAAAAATCGTTGTATA 44811 30 100.0 36 .............................. GTGTTATTAGTTAAATCAACTGGAGTTGGTGGCAGT 44745 30 100.0 36 .............................. GGGGCTGGTGTCCAATCTGTAGCCTTATTTCCTTCT 44679 30 100.0 36 .............................. CCAATGTTGTGAGTATTAAATGTATTCGCGCAGAAT 44613 30 100.0 34 .............................. CAAGTATTAGATAATGATGGTGTTTTAGCAATAG 44549 30 100.0 35 .............................. ACGATTTTATTATTGATATTAATGCAGTGTATACT 44484 30 93.3 36 ......................GA...... AAGTGATAATTGGAAATAATATATTTTAAGAGAATT 44418 30 80.0 42 AC......G...T....A....T....... GCTTTATTAGTATAACCTTGAATTACACCTAAGGCAAATATA 44346 30 73.3 0 ........A.....AAT.T....AAA.... | ========== ====== ====== ====== ============================== ========================================== ================== 10 30 94.7 37 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : AAGAGAAGAAGAAAGAGAACAATACAGATTGAAGGATGTTGAAAGAGTTATAAAATTACTAAACAAAAAGTTTAAGAATGTAGATGAAGCTGTGATAGGAAAGGTAAAATTATTAGACAGTGACAGCCTAAATTCAATTATAGAAGACATATTTGACATAGAAACCATAGAAGATTTAAAAAGATATGGAATTTAAATAATAAAGTATCTTTAAAGTTTTGAAAGTGAGCTTTAAAGGTGCTTTTTCATTTGAAATAAAAAAATGGCTAGAGAGTCTTGAAAAAAACTTATGGTGTGCTTCAAACTAAATATCATGGGTAGATTTTTTCCAACCTTTCTGAAGATAGAAGGTGCTTCAATACATTCATATGTAATGGATTGAGTCACTTTTTGGCTGAGTTTATGAAAATTGAAAAACGGTTGGAAAATTTTCAGAGAATGCCTTTATTGTTAAGGGTTTTAGGGATATAATGAAAATAAAGAATGGCTATTTTACTGTG # Right flank : AAATTTGTTTAAGATATGCTTTCAAATATTTTTTGCTTATTCAGCTTTATTAGTTTAACAATGAATATTAACTTGATTTAAGTACAATAATATATGTAAAGACAAAACTTAAATTATGGAGGATTTGAACATGAACAAATATTGGATTATGATTATTGCCTTTTTTATCATTTGCTTAGTAAAATCAACAATAGGTATAGACTTAAAGCTAACCATAAAAAGATAATCCTGTTACACTAAATTTATCTAAAAAGCTCCTCATATTTGCAGGACTTTCCATAAATTAATCGAATAATAACATATATGGAAGATAAATCTTTGTAATATACAAATGAATGGAGGGCGATTATGGAAATAAATGAGATAAACATTAAAGTATACATCCTAGAAAACATTCCCATAGAACAGGCATTGGAAGATCTAAGCAAATTAATGGATAAATCCTTCTATGAAAATGAGGACATGAAAAGTTTCCACGAAGAAAATGTTATGAAAAATTA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 47036-46409 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFAQ01000004.1 Clostridium autoethanogenum strain H21-9 Contig_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 47035 30 100.0 36 .............................. TAATTTTTTACATAGGTATTTGGCACTAACCATTTT 46969 30 100.0 36 .............................. TTAGCATATTTCTGTTCTAGTGGACTTTAAAGCTTA 46903 30 100.0 36 .............................. TTGACCATCCCTAAGTTTTGAAATTCATCTAGGAGC 46837 30 100.0 36 .............................. AGATTAATTTTATAATTAAGATGTTTCATATCTAAT 46771 30 100.0 36 .............................. CATATATGTTGTTTTATAACCTTTCTATCTTCACCT 46705 30 100.0 38 .............................. TACCAAGATGCTGTCCCTGAAAGTCCCAAATTTGCACC 46637 30 100.0 36 .............................. CAAATTCGGTAGGACATTTTTAAAGGTATTGGTTCT 46571 30 100.0 37 .............................. TATAACATTCCACGAGGACCATCTACAGGATGAGTAA 46504 30 90.0 35 ...............GA...A......... ATATATCTTTCATCATCCGTATGTGCATCATCTAT 46439 30 73.3 0 .....G.........GATC.A.T...G... | C [46414] ========== ====== ====== ====== ============================== ====================================== ================== 10 30 96.3 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TTTAGTAATTTGCTTAGCTGAATAATACCTATATCCAGTGAAGGTATCTATTTGAGCAGGTTTAAAAAGTCCCGTCTCATCATAATATCGCAGCATACGTACAGATACCATTGTTAGTTTAGAAAAATCTCCAATTTTAAACATAGAATCAACTCCCTAAAAATATCACTGCTAATTACAATTTAAGAATAATGCCTCACACCGTGTTAGAGTCAATATTTTATTTTTATACTTTAACATTAAATGAAGCAAAATACTATATATGTGGCTATTTTATTAAATGAAAGACTTACTAATGTTTTTGATAGTATACAGGTCAGATTTTTTCCAACCTCTTTGAAGGTAAAGTGTGCTTAAATGCATTGATATGTAATGGACTGAGGCACTTTTTTGGCTGAGTTTATGAAAATTGAAAAACGGCTGGAAAATTTTCAGCGGATGCCTTTATTGTTAAGGGTTTTAGGGATATAATGAAAATAAAGAATGGCTATTTTATTGTG # Right flank : AAAAATAATAATCTGTAAATATTTAAAAATATGTTGGATAGAAAAACATAAATGCTTTATAATTAATACTAAGAAGGATAAACATAAGAGGATGTGGATGAGATTTGGCAAAGAAACACGATTTTGATGCAGCATGGAAATCAATTTTGGAAGCCTTTGAAGTAGAAATAGTAGAACTGCTTTTCCCGGAGATATTTAAAAATATAGCATGGGAATATGGAACAGAATCTTTAGATAAAGAACTTCAAGAAATACAAAGGGAAATTTTTGATAGAGACAGCAGTGAAAAAGTAATATCAGATAAAATAATAAAGGTAAAATTAAAGAATAATAAGAATAAAATATTGTTTATACATGTGGAAGTACAAAGTTATGCCAGCTGTGATGAAGTATTTGGGGAGAGAATGTTCAGATATTTCTATAGAATCTGGGACAAATTTAGGTATAGGTATGAGGACAAATCGGAAATAGTGGCAGCAGCGATATATACATATAAGGGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 48383-48607 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFAQ01000004.1 Clostridium autoethanogenum strain H21-9 Contig_004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 48383 30 100.0 34 .............................. GAGGTAAAATATTTGAACAGATTGAATCTAATTC 48447 30 100.0 36 .............................. TTTTCTCTAGAGGTATAAAAACCCCTTCTTTATATA 48513 30 100.0 35 .............................. GAAAAACTAATAACTCAATATAAGAAGTTAGTAGT 48578 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 35 ATTTAAATACATCTCATGTTGAGGTTCAAC # Left flank : TGCTTATGCCACCTATCACGATGAAGATTATAAAGAAGGACCAGCTGATGTGGAAGTTGCAGTTGTTGTTGAAAAATTATTAAATGATGCTGATGGTTTTACTTTCAAAGAAACTGCACCAATAGACCAGGTTGTAAGCATCTTAGTTCCAGGTGAATTTTCAAATATTGCTCCTGCATATAATTATCTTGGACAATGGATTGAAGAAAATGGATACAGTATATGTGGTAGTGCCCATGAATTACCTCTAAAAGGACCTTGTAATGAAGCAAACCCTAGTGATTACTTAACTGAAATACAAGTCCCAGTAAAAAAAATATAAATTAATATTAATATTACTTACAAATTGTATATGTATGATTTGTAAGCAATATTAAAATGCTGTAACTACAAAATAATTTCTATCCTAGCAGGAAATTTAAACCTGCTGCACTTCATTTGAATTTTTAAAATAAGAACAATGTCTTAGTTTTAAATCACATAAATCAAAATATAGATAC # Right flank : CCACAGTAAAATAGCCATTCTTTATTTTCATTATATCCCTAAAGTCCTTAATAATAAAGGCATTCGCTGAAAATTTTCCAACCGTTTTTGAATTTTCATAAACTCAGCCAAAAAGTGACTCAATCCATTACATATCAATGTATTAAAACACCTTCTATCTTCAGAGAGGTTGGAAAAAATCTATCCGTGATATTGTTTAAAACGCACCATAAGCTTTTTCCAAAATCCTCTAAACATTTTTTTATTTCAAATAAAAAAGCACCTTTAAAGCTTACTTTCAAAACTTTAAAGATACTTTATTATTTAAATTCCATATCTTTTCAAATCTTCCATAGTTTCTATGTCAAATATGTCTTCTATAATTGAATTTAGGCTATCACTGTCTAATAATTTTACCTTTCCTATCACAGTTTCATCTACATTCTTAAACTTTTTGTTTAGTAATTTTATAACCCTTTCAACATCCTTCAACCTGGATTGCTCTCTCTCTTCTTCTCTTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTGAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 5 50282-50840 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFAQ01000004.1 Clostridium autoethanogenum strain H21-9 Contig_004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 50282 30 73.3 36 GCAAGTG.......C............... AATTAAACTAATAGATATTATGGACCAAGCAAAGTA 50348 30 86.7 38 .............CC.....A.C....... GATATTGCAGAGATAATAGTTGTAGGGACAATTAAGAG 50416 30 86.7 35 ...........C.CC.....A......... ACCTTTGCTAAATATTCAGCATTAGCAACCAAAGA 50481 30 93.3 36 ..............C.....A......... TGTAGATAGTGCTAAAACTTTAGTAAATGCACTTCC 50547 30 100.0 36 .............................. TAGTTATGATGATTTAGAAGATGAATATTCACACAA 50613 30 100.0 36 .............................. AGCTTCATTACAATCTTCATATAGTATAAAAGATCC 50679 30 100.0 36 .............................. TTTGCATTGGCAGCTTTAACTCCATCTACATCTATT 50745 30 100.0 36 .............................. AGCAACTATAAGGGATAGAATGTTAAACAATTTATC 50811 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 93.3 36 ATTTAAATACATCTTATGTTGAGGTTCAAC # Left flank : TTCTAACAATGCTTTTACCTGAAAGAGTTGTCTCTTGATTAAATGATATATTATTTTCTATATAATAATTTATTAGTTTTACTGCTTCCCTTGCACATTTGATTTGAAGATTATTATCTTTCCATGAACCTATTCTTGCTACCATTTCATCTGTATTTATTCTCTCTTCATTTTTATTCCTTTGATAATAAACAGATTTATATATTGATGTCTTTCCAGCACCATTAACACCAGCAAATATAGTATATGTAGCCACTTTTACTCACCTATTATTCTTCTTTGTTCTTTTTGCAGCACCAGATTAGATAGTGTTATATAAAAATCCTGTTCTTCTTTCGTTTTTGCATTTTTAAATAATTCTTTTAAGTCCCAATACGAATATTTTAAGAATTGTTCATATAAGTTATTTTGTTTATTTGTTTTCTCCATATTAATTCCTCCAACAAATAATACTTTTATTATATTATAGCCTAATACATCACTTATATAAATAATTTTCT # Right flank : CCACAGTAAAATAGCCATTTCTTATTTTCATTATAGTCCTAAAACCCTTAATAATAAAGGCATCAACAGAAAATTTTCCAACCGTTTTTCACTTTTCACAAACTCAATAAAAAAAGTACCCTCATCCATTGAATTCAAATGACTTAAGACATCTCTATCCCCAAATCAGTTGGAAAATACTCAACAAAATGTAGTAATATATTGTATAAAATAGTATAATTTATTTGTACAATATACAGATAAATAGTAAATTTATGAGGGAGAATGTGTATTATGAAGGAATCGACCATTACAACTACATTTAAATCAGATATTAAAAAAGTATGGGAAGTAGTTACAAACAACAATAAATATGAGTGGCGAAGCGATTTAAGTAAAATTGATGTTTCAGAAGATGGAAACTCTTTTACAGAATATACAAAAAATAATTTTCCTACTAAATTTAACATTACTTTAAAAAAGCCTTATGAGCGATATGAGTTTGATATGACTAATAAAAA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTTATGTTGAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 6 63046-61755 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFAQ01000004.1 Clostridium autoethanogenum strain H21-9 Contig_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 63045 30 100.0 35 .............................. AATAGCAAGTTTAGCAAGTGGAAGCCCTAAAAAAA 62980 30 100.0 36 .............................. CCAGTCAATCCAAGTTTTTTAATTTGCTTTATATCT 62914 30 100.0 37 .............................. TGTTCACTATCTTTCGTCATTTCAACGTTATAATATC 62847 30 100.0 35 .............................. GAAACTGGAAAGGTACCAGGCATAAGTGGAAATGT 62782 30 100.0 36 .............................. TGATTCTTAACATCAGCCACAATACTTGCGAATTTA 62716 30 100.0 39 .............................. GTGGTAAATACTATTGGTCTTAACCAGCCATGTTTAACT 62647 30 100.0 37 .............................. GTTCATATATTAAATTACTTTTTTCAATGGTTTCTCC 62580 30 100.0 35 .............................. CTATTTAATAATAAATTCCTTCCACCTATTTGCAA 62515 30 100.0 36 .............................. TCGAACCAGAGTATACTATTAACTCTACAAAGATTC 62449 30 100.0 37 .............................. TTTAAAATAAACCTTAAAAAACATAAAGATGAAAGAA 62382 30 100.0 34 .............................. TTGGACAAGGATGGAATATACAGAGTTTTAAAAG 62318 30 96.7 36 .................A............ ACTTTAAAATCACTTGCAACCTCTTTAGCTTTTTCT 62252 30 100.0 38 .............................. AAGGTTGGGCACATGACATGATAGATGGGTTTGTAAAA 62184 30 100.0 36 .............................. AAAGGGTGATTTAGTAGGGCTATATCCTTATAACTA 62118 30 100.0 37 .............................. CTAAAGTATGAAATGAGGGCATTTTTTTAAAGTAATA 62051 30 100.0 35 .............................. TTAACAAGTACCTTATGTGAAATTCCTATTTTGGG 61986 30 100.0 36 .............................. GGGTAGTAATCTTCTCCATGATTTATGCAATATTCT 61920 30 100.0 37 .............................. CTAAAAACTGCAGCTTTATTTATTGTAATAGATATAT 61853 30 100.0 37 .............................. GAATAAGCCTTGGCACTTATATGGATGCTGCCTTGAC 61786 30 90.0 0 .......................AA....A | GG [61759] ========== ====== ====== ====== ============================== ======================================= ================== 20 30 99.3 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : CTACTATATTTGTTTTTGATAATAATAAATTAATTGGTTTTGGTCGTGCAATTTCAGATGGAGTTTACCAGGCTGCAATTTATGATGTAGCAGTATTACCTGAATATCAAGGTAAGAATATTGGAAGAACAATTGTTAATGGTATTTTAAATCGTATTCCACAGTGCAATTTTATATTGTATGCTTCACCTGGTAAAGAAGCCTTTTATGAAAAATTAAGTTTTAGAAAAATGAAAACAGGAATGGCATTGTTTTGTAATACAGAAAAAATGCAGACAAAAGGCTTTATTGAATAGATCCTGGCAAGTGGAAGACAGAAACATTTTTCCAACCAATTTGAAAAGCACAAGTGCCTTAAGCCGTTTAAATTGAATGGCTGAGAGTACTTTTTTGGCTGAGTTTATGAAAAGTGAAAAACGGTTGGAAAAATTTCAGCAGATGCCTTTATTATTAAGGGTTTTAGAGATATAATGAAAATAAAGAATGGCTATTTTACTGTG # Right flank : GATGACAGTAAATATGAGCTTTAGTATGATAGAATATATGGAATAAAGTGTTTATCATATATAAATGGAGGAATGATGCTATGGGAGAATTGTCCACCTTGCCTAATATTGGAAAAACAGTTGGACAACAATTAAATCAAGTTGGGATAGAAACAATAGAACAATTAACTGATATCGGAAGCAGGGAAGCTTGGTCTAGAATAAAAAGCATTGATCATTCTGCGTGTATAAATAGGTTGTATGCTTTGGAGGGTGCCATAGAGGGAATTAGGTGGCATAATCTTTCAGAAGAAGTAAAAGAAGAATTGAAAGATTTTTACAATACATTTAAATAATTGTGCAATTAGATGGCATAATAAAATATAGGGTTTCTAATTTAAGTGAACTTCCAAGTTAGAAATCCTATACCTTTAAGAGTTAATATTAGCGTCCATAAAACTGTAGATATTTTTCAATATTTGATTTTATATATTCGGCACTGTGGTTACCGCAAAATACGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //